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joelnitta/canaper: v0.0.1

Joel Nitta

NEW FEATURES
  • Add cpr_rand_comm() function for generating a random community 2f3318c1d62f401d7c99bdcc16c64194359c3fbe

  • Implement user-provided community matrix randomization functions

BREAKING CHANGES
  • Use vegan for community matrix randomizations instead of picante b0a2d47130398eb62e28eba4783057f781763645
BUG FIXES
  • Fix error in classification of endemism types with cpr_classify_endem(), where super-endemic cells were previously being assigned if pe_obs_p_upper or pe_obs_alt_p_upper were highly significant (P > 0.99), to requiring both to be highly significant 2f3318c1d62f401d7c99bdcc16c64194359c3fbe

  • Fix calculation of RPD, RPE where alternative tree had all branch lengths converted to same value, to converting only non-zero branch lengths to same value 50ed6e975d14adba334f06a984d521ff69ed961c

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