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joelnitta/canaper: v0.0.1

Joel Nitta

NEW FEATURES

  • Add cpr_rand_comm() function for generating a random community 2f3318c1d62f401d7c99bdcc16c64194359c3fbe

  • Implement user-provided community matrix randomization functions

BREAKING CHANGES
  • Use vegan for community matrix randomizations instead of picante b0a2d47130398eb62e28eba4783057f781763645
BUG FIXES

  • Fix error in classification of endemism types with cpr_classify_endem(), where super-endemic cells were previously being assigned if pe_obs_p_upper or pe_obs_alt_p_upper were highly significant (P > 0.99), to requiring both to be highly significant 2f3318c1d62f401d7c99bdcc16c64194359c3fbe

  • Fix calculation of RPD, RPE where alternative tree had all branch lengths converted to same value, to converting only non-zero branch lengths to same value 50ed6e975d14adba334f06a984d521ff69ed961c

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Publication date:
October 26, 2021
DOI:
10.5281/zenodo.5599240

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Versions

Version v1.0.0 10.5281/zenodo.7145489 Oct 5, 2022
Version v0.0.3 10.5281/zenodo.7089941 Sep 18, 2022
Version 0.0.2 10.5281/zenodo.5885646 Jan 20, 2022
Version 0.0.1 10.5281/zenodo.5599240 Oct 26, 2021
Version 0.0.0.9000 10.5281/zenodo.5094033 Jul 13, 2021
Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.5094032. This DOI represents all versions, and will always resolve to the latest one. Read more.

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