Published October 24, 2021
| Version v2.4
Software
Open
ahmedmagds/GNUVID: GNUVID v2.4
Description
- 1,392,002 High Quality GISAID sequences have been included in this analysis.
- GNUVID compressed the 13920020 ORFs in the 1392002 genomes to 755489 unique alleles.
- 731164 Sequence Types (STs) have been assigned in this dataset and were clustered in 4084 clonal complexes (CCs).
- 1196 new CCs have been assigned (2888 CCs in Jun 2021 to 4084 in Aug 2021).
- 3123 CCs have been Inactive (i.e. Last time seen more than 1 month before 2021-08-31).
- 397 CCs have gone Quiet (i.e. Last seen 2-4 weeks before 2021-08-31).
- 564 CCs have been Active (i.e. Last seen within the 2 weeks before 2021-08-31).
- A table showing summary information of the 564 Active Clonal Complexes (CCs) can be found here. A full report for the 4084 CCs can be found here
Files
ahmedmagds/GNUVID-v2.4.zip
Files
(45.1 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/ahmedmagds/GNUVID/tree/v2.4 (URL)