snakemake_dag 1 summarise_concatenation 2 mrbayes: atp 9 plot_mrbayes_tree 2->9 3 mrbayes_atp_input 3->2 4 code_indels_atp 4->3 5 mrbayes: its 10 plot_mrbayes_tree 5->10 6 mrbayes_its_input 6->5 7 mrbayes: both 11 plot_mrbayes_tree 7->11 16 beast_input 7->16 8 mrbayes_both_input 8->7 8->16 12 beast_consensus_tree 19 plot_beast_tree 12->19 23 nexus2newick 12->23 13 beast_combine_trees 13->12 14 beast 14->13 15 beast_split_xml: run 1 15->14 16->15 18 beast_split_xml: run 2 16->18 17 beast 17->13 18->17 20 summarise_models 21 lagrange: unconstrained 21->20 30 summarise_splits 21->30 22 tree_for_lagrange 22->21 25 lagrange: steppingstone 22->25 26 lagrange: overland 22->26 23->22 24 dmasks 24->21 24->25 24->26 25->20 28 plot_lagrange 25->28 31 summarise_splits 25->31 26->20 32 summarise_splits 26->32 34 data/atp.fas 34->1 34->4 34->8 35 data/its.fas 35->1 35->6 35->8 36 data/samples.fas 36->21 36->25 36->26