{ "access": { "embargo": { "active": false, "reason": null }, "files": "public", "record": "public", "status": "open" }, "created": "2021-10-19T16:07:58.686246+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "files": { "count": 10, "enabled": true, "entries": { "EMS_1.fq.gz": { "checksum": "md5:4f387f8f62335d994fe980f6485c8933", "ext": "gz", "id": "4c7d95b8-82f9-47d0-9bdf-8059fdad9635", "key": "EMS_1.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 957818478 }, "EMS_2.fq.gz": { "checksum": "md5:b514ce263de67f505d789bda290c3347", "ext": "gz", "id": "f56ef9d8-9531-4484-939a-4b7ae8b51ece", "key": "EMS_2.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 1041832544 }, "ENN_1.fq.gz": { "checksum": "md5:91c985363fbdab1affcdb510dd18ff9e", "ext": "gz", "id": "c31f244b-1756-4ede-aa6f-9ba62710c9f3", "key": "ENN_1.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 386306066 }, "ENN_2.fq.gz": { "checksum": "md5:0ca5708cd81d4fac2a325f69ac135a19", "ext": "gz", "id": "577f1378-526f-4786-b447-38a889e2f25e", "key": "ENN_2.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 386311516 }, "LHS_1.fq.gz": { "checksum": "md5:3941794f219a98176c6a87ce41f7b94e", "ext": "gz", "id": "1f6a8abc-7da6-4b2b-b6a3-d90da46fe251", "key": "LHS_1.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 2963990781 }, "LHS_2.fq.gz": { "checksum": "md5:ea0c039c53569548c7558c73abf887c7", "ext": "gz", "id": "d7846004-7176-4c73-b92d-8c42b473e309", "key": "LHS_2.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 3107372983 }, "LNN_1.fq.gz": { "checksum": "md5:e94c265abe1d203cf8421af5f7b8fc73", "ext": "gz", "id": "b1f9e462-f5e3-4662-b54b-a8fb64f66f49", "key": "LNN_1.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 2094317939 }, "LNN_2.fq.gz": { "checksum": "md5:38ee87f29d67a92f5ba3eaaf21bda70a", "ext": "gz", "id": "9bd26a83-84c4-474f-a85d-8d67bbc0818d", "key": "LNN_2.fq.gz", "metadata": null, "mimetype": "application/gzip", "size": 2094272209 }, "ZymoBIOMICS_genomes.fasta": { "checksum": "md5:210ce1e0659322ce241bba8ea41cb38c", "ext": "bin", "id": "a31c8329-571c-4660-87f3-af1cdf2008f0", "key": "ZymoBIOMICS_genomes.fasta", "metadata": null, "mimetype": "application/octet-stream", "size": 30947221 }, "about.md": { "checksum": "md5:c91a5bc26e77af63220d6cf5fe850d46", "ext": "md", "id": "b42536ef-9792-41e8-9f19-4b6e915ac6a6", "key": "about.md", "metadata": null, "mimetype": "application/octet-stream", "size": 1646 } }, "order": [], "total_bytes": 13063171383 }, "id": "5579145", "is_draft": false, "is_published": true, "links": { "access": "https://zenodo.org/api/records/5579145/access", "access_links": "https://zenodo.org/api/records/5579145/access/links", "access_request": "https://zenodo.org/api/records/5579145/access/request", "access_users": "https://zenodo.org/api/records/5579145/access/users", "archive": "https://zenodo.org/api/records/5579145/files-archive", "archive_media": "https://zenodo.org/api/records/5579145/media-files-archive", "communities": "https://zenodo.org/api/records/5579145/communities", "communities-suggestions": "https://zenodo.org/api/records/5579145/communities-suggestions", "doi": "https://doi.org/10.5281/zenodo.5579145", "draft": "https://zenodo.org/api/records/5579145/draft", "files": "https://zenodo.org/api/records/5579145/files", "latest": "https://zenodo.org/api/records/5579145/versions/latest", "latest_html": "https://zenodo.org/records/5579145/latest", "media_files": "https://zenodo.org/api/records/5579145/media-files", "parent": "https://zenodo.org/api/records/4588969", "parent_doi": "https://zenodo.org/doi/10.5281/zenodo.4588969", "parent_html": "https://zenodo.org/records/4588969", "requests": "https://zenodo.org/api/records/5579145/requests", "reserve_doi": "https://zenodo.org/api/records/5579145/draft/pids/doi", "self": "https://zenodo.org/api/records/5579145", "self_doi": "https://zenodo.org/doi/10.5281/zenodo.5579145", "self_html": "https://zenodo.org/records/5579145", "self_iiif_manifest": "https://zenodo.org/api/iiif/record:5579145/manifest", "self_iiif_sequence": "https://zenodo.org/api/iiif/record:5579145/sequence/default", "versions": "https://zenodo.org/api/records/5579145/versions" }, "media_files": { "count": 0, "enabled": false, "entries": {}, "order": [], "total_bytes": 0 }, "metadata": { "contributors": [ { "affiliations": [ { "name": "nstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal" } ], "person_or_org": { "family_name": "Vila-Cerqueira", "given_name": "P", "identifiers": [ { "identifier": "0000-0002-6121-8906", "scheme": "orcid" } ], "name": "Vila-Cerqueira, P", "type": "personal" }, "role": { "id": "projectmember", "title": { "de": "Projektmitglied", "en": "Project member" } } }, { "affiliations": [ { "name": "Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel" } ], "person_or_org": { "family_name": "Motro", "given_name": "Y", "identifiers": [ { "identifier": "0000-0003-1289-6919", "scheme": "orcid" } ], "name": "Motro, Y", "type": "personal" }, "role": { "id": "projectmember", "title": { "de": "Projektmitglied", "en": "Project member" } } }, { "affiliations": [ { "name": "Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel" } ], "person_or_org": { "family_name": "Moran-Gilad", "given_name": "J", "identifiers": [ { "identifier": "0000-0001-9134-050X", "scheme": "orcid" } ], "name": "Moran-Gilad, J", "type": "personal" }, "role": { "id": "projectmember", "title": { "de": "Projektmitglied", "en": "Project member" } } }, { "affiliations": [ { "name": "nstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal" } ], "person_or_org": { "family_name": "Carri\u00e7o", "given_name": "JA", "identifiers": [ { "identifier": "0000-0002-5274-2722", "scheme": "orcid" } ], "name": "Carri\u00e7o, JA", "type": "personal" }, "role": { "id": "projectmember", "title": { "de": "Projektmitglied", "en": "Project member" } } }, { "affiliations": [ { "name": "nstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal" } ], "person_or_org": { "family_name": "Ramirez", "given_name": "M", "identifiers": [ { "identifier": "0000-0002-4084-6233", "scheme": "orcid" } ], "name": "Ramirez, M", "type": "personal" }, "role": { "id": "projectleader", "title": { "de": "ProjektleiterIn", "en": "Project leader" } } } ], "creators": [ { "affiliations": [ { "name": "Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal" } ], "person_or_org": { "family_name": "Mendes", "given_name": "CI", "identifiers": [ { "identifier": "0000-0002-3090-7426", "scheme": "orcid" } ], "name": "Mendes, CI", "type": "personal" } } ], "description": "
LMAS is an automated workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly software using defined mock communities.
\n\nAs proof of concept, the eight bacterial genomes and four plasmids, in tripled form, of the ZymoBIOMICS Microbial Community Standards are made available to be used as reference. Simulated raw sequence data of the mock communities with evenly distributed reads, generated from the reference genomes, with and without error, were obtained with inSilicoSeq.
\n\nProject repository: https://github.com/cimendes/LMAS
\n\n", "publication_date": "2021-03-08", "publisher": "Zenodo", "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "CC0 waives copyright interest in a work you've created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach." }, "icon": "cc-cc0-icon", "id": "cc0-1.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/publicdomain/zero/1.0/legalcode" }, "title": { "en": "Creative Commons Zero v1.0 Universal" } } ], "subjects": [ { "subject": "Shotgun Metagenomics" }, { "subject": "de novo assembly" }, { "subject": "benchmark" }, { "subject": "mock community" } ], "title": "LMAS Test Dataset" }, "parent": { "access": { "owned_by": { "user": 66061 } }, "communities": {}, "id": "4588969", "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.4588969", "provider": "datacite" } } }, "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.5579145", "provider": "datacite" }, "oai": { "identifier": "oai:zenodo.org:5579145", "provider": "oai" } }, "revision_id": 3, "stats": { "all_versions": { "data_volume": 513995927956.0, "downloads": 477, "unique_downloads": 268, "unique_views": 657, "views": 703 }, "this_version": { "data_volume": 423356929029.0, "downloads": 340, "unique_downloads": 187, "unique_views": 344, "views": 367 } }, "status": "published", "updated": "2022-11-15T20:49:51.955877+00:00", "versions": { "index": 3, "is_latest": true } }