April 24, 2017 Dataset Open Access

Ryan, Devon; Wolff, Joachim

JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/BT089_CpG.meth.bedGraph"
      }, 
      "checksum": "md5:0b1f0498fd75aaa0f97fc713d6f29ad2", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "BT089_CpG.meth.bedGraph", 
      "type": "bedgraph", 
      "size": 739681204
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/BT089_CpG.meth_ucsc.bedGraph"
      }, 
      "checksum": "md5:057b88822489bde9bdac12e3cedd25fe", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "BT089_CpG.meth_ucsc.bedGraph", 
      "type": "bedgraph", 
      "size": 814564399
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/BT126_CpG.meth.bedGraph"
      }, 
      "checksum": "md5:445e1e4b5da6b84123a416d6f96344dd", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "BT126_CpG.meth.bedGraph", 
      "type": "bedgraph", 
      "size": 594066248
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/BT126_CpG.meth_ucsc.bedGraph"
      }, 
      "checksum": "md5:5bb70cd822882d3da226fbce8923dcb2", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "BT126_CpG.meth_ucsc.bedGraph", 
      "type": "bedgraph", 
      "size": 654153454
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/BT198_CpG.meth.bedGraph"
      }, 
      "checksum": "md5:789bcfa9389fdab511a2fb79329f6504", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "BT198_CpG.meth.bedGraph", 
      "type": "bedgraph", 
      "size": 824155529
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/BT198_CpG.meth_ucsc.bedGraph"
      }, 
      "checksum": "md5:8449f7f6394667d12b8ce2d9d30c4ddf", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "BT198_CpG.meth_ucsc.bedGraph", 
      "type": "bedgraph", 
      "size": 907538462
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/CpGIslands.bed"
      }, 
      "checksum": "md5:03de12fe1ccc2de751c7023bdb2a21c7", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "CpGIslands.bed", 
      "type": "bed", 
      "size": 814032
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/MCF7_CpG.meth.bedGraph"
      }, 
      "checksum": "md5:14b00ee90c707c5760979f8ca95e7328", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "MCF7_CpG.meth.bedGraph", 
      "type": "bedgraph", 
      "size": 759237368
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/MCF7_CpG.meth_ucsc.bedGraph"
      }, 
      "checksum": "md5:39bf3f310206e0bd532486e97516ba48", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "MCF7_CpG.meth_ucsc.bedGraph", 
      "type": "bedgraph", 
      "size": 836098994
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/NB1_CpG.meth.bedGraph"
      }, 
      "checksum": "md5:58165baab73721fb061f944eac0a10bf", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "NB1_CpG.meth.bedGraph", 
      "type": "bedgraph", 
      "size": 462459045
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/NB1_CpG.meth_ucsc.bedGraph"
      }, 
      "checksum": "md5:0f77f9a6f14a0fa959b8a65ae4a0e06c", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "NB1_CpG.meth_ucsc.bedGraph", 
      "type": "bedgraph", 
      "size": 509339244
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/NB2_CpG.meth.bedGraph"
      }, 
      "checksum": "md5:735b653cd30d8d7ff92aa56982c5e795", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "NB2_CpG.meth.bedGraph", 
      "type": "bedgraph", 
      "size": 815673800
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/NB2_CpG.meth_ucsc.bedGraph"
      }, 
      "checksum": "md5:989d0ba117cfed71b7d2be3c5712983d", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "NB2_CpG.meth_ucsc.bedGraph", 
      "type": "bedgraph", 
      "size": 898252579
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/subset_1.fastq"
      }, 
      "checksum": "md5:e1c9696124dcc2631fe0280c9c2f0743", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "subset_1.fastq", 
      "type": "fastq", 
      "size": 133849105
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/subset_2.fastq"
      }, 
      "checksum": "md5:ab7061a53c9e1021f55146ec3eefa260", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "subset_2.fastq", 
      "type": "fastq", 
      "size": 139543267
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72/aligned_subset.bam"
      }, 
      "checksum": "md5:53c45ef7743b3ae91e4fbff8febba8c7", 
      "bucket": "ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
      "key": "aligned_subset.bam", 
      "type": "bam", 
      "size": 123621638
    }
  ], 
  "owners": [
    30755
  ], 
  "doi": "10.5281/zenodo.557099", 
  "stats": {
    "version_unique_downloads": 446.0, 
    "unique_views": 3259.0, 
    "views": 3435.0, 
    "downloads": 1008.0, 
    "unique_downloads": 446.0, 
    "version_unique_views": 3250.0, 
    "volume": 449464065384.0, 
    "version_downloads": 1008.0, 
    "version_views": 3424.0, 
    "version_volume": 449464065384.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.557099", 
    "latest_html": "https://zenodo.org/record/557099", 
    "bucket": "https://zenodo.org/api/files/ab7dc7ee-d1dd-48fe-bfc4-ca67f4683c72", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.557099.svg", 
    "html": "https://zenodo.org/record/557099", 
    "latest": "https://zenodo.org/api/records/557099"
  }, 
  "created": "2017-04-24T17:58:10.785058+00:00", 
  "updated": "2019-04-10T04:12:13.788533+00:00", 
  "conceptrecid": "797245", 
  "revision": 7, 
  "id": 557099, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.557099", 
    "description": "<p>This dataset is based on data from the publication \"Hierarchical Clustering of Breast Cancer Methylomes Revealed Differentially Methylated and Expressed Breast Cancer Genes\" (10.1371/journal.pone.0118453). It is a subset to use it as training material for a methyl-seq Galaxy course.</p>\n\n<p>\u00a0</p>\n\n<p>Thanks for the friendly permission from\u00a0I-Hsuan Lin to use it.\u00a0</p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "MethylSeq_2017", 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "797245"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "557099"
          }
        }
      ]
    }, 
    "keywords": [
      "Methyl-seq", 
      "Galaxy", 
      "Freiburg", 
      "breast cancer"
    ], 
    "publication_date": "2017-04-24", 
    "creators": [
      {
        "affiliation": "Creater of the subdataset to use it as Galaxy training material", 
        "name": "Ryan, Devon"
      }, 
      {
        "affiliation": "Creater of the subdataset to use it as Galaxy training material", 
        "name": "Wolff, Joachim"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }
  }
}