October 8, 2021 Software Open Access

Zappia, Luke; Theis, Fabian J

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    <subfield code="a">&lt;p&gt;Changes following the first round of revisions:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;Submit the repository to &lt;a href="https://doi.org/10.5281/zenodo.5195628"&gt;Zenodo&lt;/a&gt; and document in &lt;code&gt;README.md&lt;/code&gt;&lt;/li&gt;
&lt;li&gt;Add the preprint reference to &lt;code&gt;README.md&lt;/code&gt; and add &lt;code&gt;CITATION.cff&lt;/code&gt;&lt;/li&gt;
&lt;li&gt;Update some packages used for analysis and add a few new ones&lt;/li&gt;
&lt;li&gt;Update the database version used for analysis to 2021-09-26&lt;/li&gt;
&lt;li&gt;Revise the models for tools&lt;/li&gt;
&lt;li&gt;Add model fits to model plots&lt;/li&gt;
&lt;li&gt;Add new plots showing the delay in adding tools to the database, abstract word clouds and correlations between metrics&lt;/li&gt;
&lt;li&gt;Add PDF figure output (and adjust scaling for this)&lt;/li&gt;
&lt;li&gt;Other minor updates to figures&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;strong&gt;Full Changelog&lt;/strong&gt;: &lt;a href="https://github.com/scRNA-tools/1000-tools-paper/compare/20210813...20211008"&gt;https://github.com/scRNA-tools/1000-tools-paper/compare/20210813...20211008&lt;/a&gt;&lt;/p&gt;</subfield>
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