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1000 tools paper

Zappia, Luke; Theis, Fabian J


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  <identifier identifierType="DOI">10.5281/zenodo.5555961</identifier>
  <creators>
    <creator>
      <creatorName>Zappia, Luke</creatorName>
      <givenName>Luke</givenName>
      <familyName>Zappia</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-7744-8565</nameIdentifier>
    </creator>
    <creator>
      <creatorName>Theis, Fabian J</creatorName>
      <givenName>Fabian J</givenName>
      <familyName>Theis</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-2419-1943</nameIdentifier>
    </creator>
  </creators>
  <titles>
    <title>1000 tools paper</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-10-08</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/5555961</alternateIdentifier>
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  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/scRNA-tools/1000-tools-paper/tree/20211008</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.5195628</relatedIdentifier>
  </relatedIdentifiers>
  <version>20211008</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Changes following the first round of revisions:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;Submit the repository to &lt;a href="https://doi.org/10.5281/zenodo.5195628"&gt;Zenodo&lt;/a&gt; and document in &lt;code&gt;README.md&lt;/code&gt;&lt;/li&gt;
&lt;li&gt;Add the preprint reference to &lt;code&gt;README.md&lt;/code&gt; and add &lt;code&gt;CITATION.cff&lt;/code&gt;&lt;/li&gt;
&lt;li&gt;Update some packages used for analysis and add a few new ones&lt;/li&gt;
&lt;li&gt;Update the database version used for analysis to 2021-09-26&lt;/li&gt;
&lt;li&gt;Revise the models for tools&lt;/li&gt;
&lt;li&gt;Add model fits to model plots&lt;/li&gt;
&lt;li&gt;Add new plots showing the delay in adding tools to the database, abstract word clouds and correlations between metrics&lt;/li&gt;
&lt;li&gt;Add PDF figure output (and adjust scaling for this)&lt;/li&gt;
&lt;li&gt;Other minor updates to figures&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;strong&gt;Full Changelog&lt;/strong&gt;: &lt;a href="https://github.com/scRNA-tools/1000-tools-paper/compare/20210813...20211008"&gt;https://github.com/scRNA-tools/1000-tools-paper/compare/20210813...20211008&lt;/a&gt;&lt;/p&gt;</description>
    <description descriptionType="Other">If you use any of the code in this repository or analysis in the publication please cite as below.</description>
  </descriptions>
</resource>
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