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Software Open Access

1000 tools paper

Zappia, Luke; Theis, Fabian J

Changes following the first round of revisions:

  • Submit the repository to Zenodo and document in README.md
  • Add the preprint reference to README.md and add CITATION.cff
  • Update some packages used for analysis and add a few new ones
  • Update the database version used for analysis to 2021-09-26
  • Revise the models for tools
  • Add model fits to model plots
  • Add new plots showing the delay in adding tools to the database, abstract word clouds and correlations between metrics
  • Add PDF figure output (and adjust scaling for this)
  • Other minor updates to figures

Full Changelog: https://github.com/scRNA-tools/1000-tools-paper/compare/20210813...20211008

If you use any of the code in this repository or analysis in the publication please cite as below.
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