XPP model
This model was converted from XPP ode format to SBML using sbmlutils-0.1.5a6
.
# Excitatory cortical neurons, normal [Ca]. # number Cm=1.0 number pms=3,pns=4 number VNa=55.0,t_tauh=-40.5,t_taun=-27.0 number thetaa=-50.0,sigmaa=20.0,thetab=-80.0,sigmab=-6.0,tauBs=15.0 number thetam=-30.0,sigmam=9.5,sigmah=-7.0,sigman=10.0,sigmaz=5.0 number VCa=120 number thetar=-20.0,sigmar=10.0,thetac=-30,sigmac=7 number pwrc=1,pwrq=4 # p gNa=35.0,gKdr=6.0,gL=0.05,Iapp=1.0 p gA=1.4,gNaP=0.2,gZ=1.0 p thetaz=-39.0,tauZs=75.0 p phi=10.0, thetah=-45.0 p thetan=-35.0,thetap=-41.0,sigmap=3.0 p VK=-90.0,VL=-70.0 p gCa=0.08,gKCa=10.0,gKAHP=5 p tauRs=1.0,aq=2,ac=6,tauq=450,tauCa=13,uuCa=0.13,tauKc=2 # GAMMAF(VV,theta,sigma)=1.0/(1.0+exp(-(VV-theta)/sigma)) ZFUNC(AA,CA,zz)=1/(1+(AA^zz/CA^zz)) # VVs'=(-gL*(VVs-VL)-INa-INaP-IKdr-IA-Iz-ICa-IKC-IAHP+Iappx)/Cm hhs'=phi*(GAMMAF(VVs,thetah,sigmah)-hhs)/(1.0+7.5*GAMMAF(VVs,t_tauh,-6.0)) nns'=phi*(GAMMAF(VVs,thetan,sigman)-nns)/(1.0+5.0*GAMMAF(VVs,t_taun,-15.0)) bbs'=(GAMMAF(VVs,thetab,sigmab)-bbs)/tauBs zzs'=(GAMMAF(VVs,thetaz,sigmaz)-zzs)/tauZs rrs'=(GAMMAF(VVs,thetar,sigmar)-rrs)/tauRs ccs'=(GAMMAF(VVs,thetac,sigmac)-ccs)/tauKc qqs'=(ZFUNC(aq,Ca,pwrq)-qqs)/tauq Ca'=-uuCa*ICa-Ca/tauCa # Iappx=Iapp #if(t<=3.0)then(Iapp)else(0.0) Minfs=GAMMAF(VVs,thetam,sigmam) Pinfs=GAMMAF(VVs,thetap,sigmap) Ainfs=GAMMAF(VVs,thetaa,sigmaa) mKCa=ZFUNC(ac,Ca,pwrc) # INa=gNa*(Minfs^pms)*hhs*(VVs-VNa) INaP=gNaP*Pinfs*(VVs-VNa) IKdr=gKdr*(nns^pns)*(VVs-VK) IA=gA*Ainfs^3*bbs*(VVs-VK) Iz=gZ*zzs*(VVs-VK) ICa=gCa*rrs^2*(VVs-VCa) IKC=gKCa*mKCa*ccs*(VVs-VK) IAHP=gKAHP*qqs*(VVs-VK) # VVs(0)=-71.962 hhs(0)=0.979199 nns(0)=0.0242166 bbs(0)=0.207565 zzs(0)=0.0013689 Ca[0]=0.000787 rrs(0)=0.005507 ccs(0)=0.002486 qqs(0)=0.0 # @ MAXSTOR=800000 @ BACK=Black @ XP=T @ YP=VVs @ AXES=2 @ TOTAL=500.0 @ DT=0.05 @ NJMP=1 @ T0=0.0 @ TRANS=0.0 @ NMESH=40 @ METH=rungekutta @ DTMIN=0.001 @ DTMAX=1.0 @ TOLER=0.00001 @ BOUND=10000.0 @ DELAY=0 @ XLO=0.0, XHI=500.0, YLO=-90.0, YHI=30.0 @ NTST=50,NMAX=2000,NPR=50 @ DS=0.02,DSMIN=0.001,DSMAX=0.5 @ PARMIN=-10,PARMAX=50,NORMMIN=0.0,NORMMAX=10000.0 @ AUTOVAR=VVs1,AUTOXMIN=-10.0,AUTOXMAX=50.0,AUTOYMIN=-90.0,AUTOYMAX=50.0 done
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Copyright © 2017 Matthias Koenig
Redistribution and use of any part of this model, with or without modification, are permitted provided that the following conditions are met:
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Model :
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type | FunctionDefinitions [6] | name | math | sbo | cvterm |
---|---|---|---|---|---|
FunctionDefinition | max
|
minimum | |||
FunctionDefinition | min
|
maximum | |||
FunctionDefinition | heav
|
heavyside | |||
FunctionDefinition | mod
|
modulo | |||
FunctionDefinition | gammaf
|
||||
FunctionDefinition | zfunc
|
type | Parameters [73] | name | constant | value | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | cm
|
cm = 1.0 | F | 1.0 | None | |||
Parameter | pms
|
pms = 3 | F | 3.0 | None | |||
Parameter | pns
|
pns = 4 | F | 4.0 | None | |||
Parameter | vna
|
vna = 55.0 | F | 55.0 | None | |||
Parameter | t_tauh
|
t_tauh = -40.5 | F | -40.5 | None | |||
Parameter | t_taun
|
t_taun = -27.0 | F | -27.0 | None | |||
Parameter | thetaa
|
thetaa = -50.0 | F | -50.0 | None | |||
Parameter | sigmaa
|
sigmaa = 20.0 | F | 20.0 | None | |||
Parameter | thetab
|
thetab = -80.0 | F | -80.0 | None | |||
Parameter | sigmab
|
sigmab = -6.0 | F | -6.0 | None | |||
Parameter | taubs
|
taubs = 15.0 | F | 15.0 | None | |||
Parameter | thetam
|
thetam = -30.0 | F | -30.0 | None | |||
Parameter | sigmam
|
sigmam = 9.5 | F | 9.5 | None | |||
Parameter | sigmah
|
sigmah = -7.0 | F | -7.0 | None | |||
Parameter | sigman
|
sigman = 10.0 | F | 10.0 | None | |||
Parameter | sigmaz
|
sigmaz = 5.0 | F | 5.0 | None | |||
Parameter | vca
|
vca = 120 | F | 120.0 | None | |||
Parameter | thetar
|
thetar = -20.0 | F | -20.0 | None | |||
Parameter | sigmar
|
sigmar = 10.0 | F | 10.0 | None | |||
Parameter | thetac
|
thetac = -30 | F | -30.0 | None | |||
Parameter | sigmac
|
sigmac = 7 | F | 7.0 | None | |||
Parameter | pwrc
|
pwrc = 1 | F | 1.0 | None | |||
Parameter | pwrq
|
pwrq = 4 | F | 4.0 | None | |||
Parameter | gna
|
gna = 35.0 | F | 35.0 | None | |||
Parameter | gkdr
|
gkdr = 6.0 | F | 6.0 | None | |||
Parameter | gl
|
gl = 0.05 | F | 0.05 | None | |||
Parameter | iapp
|
iapp = 1.0 | F | 1.0 | None | |||
Parameter | ga
|
ga = 1.4 | F | 1.4 | None | |||
Parameter | gnap
|
gnap = 0.2 | F | 0.2 | None | |||
Parameter | gz
|
gz = 1.0 | F | 1.0 | None | |||
Parameter | thetaz
|
thetaz = -39.0 | F | -39.0 | None | |||
Parameter | tauzs
|
tauzs = 75.0 | F | 75.0 | None | |||
Parameter | phi
|
phi = 10.0 | F | 10.0 | None | |||
Parameter | thetah
|
thetah = -45.0 | F | -45.0 | None | |||
Parameter | thetan
|
thetan = -35.0 | F | -35.0 | None | |||
Parameter | thetap
|
thetap = -41.0 | F | -41.0 | None | |||
Parameter | sigmap
|
sigmap = 3.0 | F | 3.0 | None | |||
Parameter | vk
|
vk = -90.0 | F | -90.0 | None | |||
Parameter | vl
|
vl = -70.0 | F | -70.0 | None | |||
Parameter | gca
|
gca = 0.08 | F | 0.08 | None | |||
Parameter | gkca
|
gkca = 10.0 | F | 10.0 | None | |||
Parameter | gkahp
|
gkahp = 5 | F | 5.0 | None | |||
Parameter | taurs
|
taurs = 1.0 | F | 1.0 | None | |||
Parameter | aq
|
aq = 2 | F | 2.0 | None | |||
Parameter | ac
|
ac = 6 | F | 6.0 | None | |||
Parameter | tauq
|
tauq = 450 | F | 450.0 | None | |||
Parameter | tauca
|
tauca = 13 | F | 13.0 | None | |||
Parameter | uuca
|
uuca = 0.13 | F | 0.13 | None | |||
Parameter | taukc
|
taukc = 2 | F | 2.0 | None | |||
Parameter | vvs
|
vvs = -71.962 | F | -71.962 | None | |||
Parameter | hhs
|
hhs = 0.979199 | F | 0.979199 | None | |||
Parameter | nns
|
nns = 0.0242166 | F | 0.0242166 | None | |||
Parameter | bbs
|
bbs = 0.207565 | F | 0.207565 | None | |||
Parameter | zzs
|
zzs = 0.0013689 | F | 0.0013689 | None | |||
Parameter | rrs
|
rrs = 0.005507 | F | 0.005507 | None | |||
Parameter | ccs
|
ccs = 0.002486 | F | 0.002486 | None | |||
Parameter | qqs
|
qqs = 0.0 | F | 0.0 | None | |||
Parameter | ca
|
F | 0.0 | dimensionless | None | |||
Parameter | iappx
|
F | 0.0 | dimensionless | None | |||
Parameter | minfs
|
F | 0.0 | dimensionless | None | |||
Parameter | pinfs
|
F | 0.0 | dimensionless | None | |||
Parameter | ainfs
|
F | 0.0 | dimensionless | None | |||
Parameter | mkca
|
F | 0.0 | dimensionless | None | |||
Parameter | ina
|
F | 0.0 | dimensionless | None | |||
Parameter | inap
|
F | 0.0 | dimensionless | None | |||
Parameter | ikdr
|
F | 0.0 | dimensionless | None | |||
Parameter | ia
|
F | 0.0 | dimensionless | None | |||
Parameter | iz
|
F | 0.0 | dimensionless | None | |||
Parameter | ica
|
F | 0.0 | dimensionless | None | |||
Parameter | ikc
|
F | 0.0 | dimensionless | None | |||
Parameter | iahp
|
F | 0.0 | dimensionless | None | |||
Parameter | F | 0.0 | dimensionless | None | ||||
Parameter | t
|
model time | F | 0.0 | dimensionless | None |
type | Rules [24] | assignment | name | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|
Rule | d vvs/dt
|
= | None | ||||
Rule | d hhs/dt
|
= | None | ||||
Rule | d nns/dt
|
= | None | ||||
Rule | d bbs/dt
|
= | None | ||||
Rule | d zzs/dt
|
= | None | ||||
Rule | d rrs/dt
|
= | None | ||||
Rule | d ccs/dt
|
= | None | ||||
Rule | d qqs/dt
|
= | None | ||||
Rule | d ca/dt
|
= | None | ||||
Rule | iappx
|
= | None | ||||
Rule | minfs
|
= | None | ||||
Rule | pinfs
|
= | None | ||||
Rule | ainfs
|
= | None | ||||
Rule | mkca
|
= | None | ||||
Rule | ina
|
= | None | ||||
Rule | inap
|
= | None | ||||
Rule | ikdr
|
= | None | ||||
Rule | ia
|
= | None | ||||
Rule | iz
|
= | None | ||||
Rule | ica
|
= | None | ||||
Rule | ikc
|
= | None | ||||
Rule | iahp
|
= | None | ||||
Rule | = | None | |||||
Rule | t
|
= | None |