This model was converted from XPP ode format to SBML using sbmlutils-0.1.5a6.
# from Rho and Prescott, PLoS Comput Biol 2012
# to be run in XPP
# code for 3-D "ungrouped" model; see Fig 7 from paper
# DIFFERENTIAL EQUATIONS
dv/dt = (Istim-gna*minf(V)*(V-Vna)-gk*w*(V-VK)-gl*(V-Vl)-gsubNa*yNa*(V-Vna)-gsubK*yK*(V-Vk))/cap
dw/dt = phi_w*(winf(V)-w)/tauw(V)
dyNa/dt = phi_yna*(yna_inf(V)-yNa)/tauyna(V)
dyK/dt = phi_yk*(yk_inf(V)-yK)/tauyk(V)
# FUNCTIONS AND PARAMETERS
minf(v)=.5*(1+tanh((v-beta_m)/gamma_m))
winf(v)=.5*(1+tanh((v-beta_w)/gamma_w))
yna_inf(v)=.5*(1+tanh((v-beta_y)/gamma_y))
yk_inf(v)=.5*(1+tanh((v-beta_y)/gamma_y))
tauw(v)=1/cosh((v-beta_w)/(2*gamma_w))
tauyna(v)=1/cosh((v-beta_y)/(2*gamma_y))
tauyk(v)=1/cosh((v-beta_y)/(2*gamma_y))
param Istim=0
param vna=50,vk=-100,vl=-70
param gk=20,gl=2,gna=20
param beta_m=-1.2,gamma_m=18
param beta_w=-13,gamma_w=10
# for some simulations, beta_w was -21
param phi_w=.15
# This code is designed to implement either a subthreshold Na or K current by setting the corresponding gsub to >0
# Leave the other gsub at 0
param gsubNa=0,gsubK=0
param beta_y=-23,gamma_y=9,
param phi_yna=0.3,phi_yk=0.15
param cap=2
# INITIAL CONDITIONS
yNa(0)=0
yK(0)=0
V(0)=-70
w(0)=0.000025
# ALWAYS USE EULER! - Actually this is only true for noise
@ total=10000,dt=.05,xlo=-100,xhi=60,ylo=-.125,yhi=.6,xp=v,yp=w
@ meth=euler
@ MAXSTOR=1000000,bounds=10000
done
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