10.5281/zenodo.5529143
https://zenodo.org/records/5529143
oai:zenodo.org:5529143
König, Matthias
Matthias
König
0000-0003-1725-179X
Humboldt-University Berlin, Institute for Theoretical Biology, Berlin
sbmlutils: Python utilities for SBML
Zenodo
2021
SBML
Python
modeling
standardization
COMBINE
Das, Sankha
Sankha
Das
BITS Pilani, Rajasthan, India
2021-09-27
https://github.com/matthiaskoenig/sbmlutils/tree/0.5.4
10.5281/zenodo.597149
https://zenodo.org/communities/eu
0.5.4
GNU Lesser General Public License v3.0 only
sbmlutils is a collection of python utilities for working with SBML models implemented on top of libsbml and other libraries with source code available from https://github.com/matthiaskoenig/sbmlutils
Features include among others
helper functions for model creation, manipulation, and annotation
HTML reports of SBML models at https://sbml4humans.de
interpolation functions to add experimental data to models
file converters (XPP)
The documentation is available on https://sbmlutils.readthedocs.io
If you have any questions or issues please open an issue
Funding
Matthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054) and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643. SBML4Humans was funded as part of Google Summer of Code 2021. Matthias König has received funds from the EOSCsecretariat.eu which has received funding from the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.
European Commission
10.13039/501100000780
831644
EOSCsecretariat.eu