Planned intervention: On Wednesday April 3rd 05:30 UTC Zenodo will be unavailable for up to 2-10 minutes to perform a storage cluster upgrade.

There is a newer version of the record available.

Published September 27, 2021 | Version 0.5.4
Software Open

sbmlutils: Python utilities for SBML

  • 1. Humboldt-University Berlin, Institute for Theoretical Biology, Berlin

Contributors

Project member:

  • 1. BITS Pilani, Rajasthan, India

Description

sbmlutils is a collection of python utilities for working with SBML models implemented on top of libsbml and other libraries with source code available from https://github.com/matthiaskoenig/sbmlutils

Features include among others

  • helper functions for model creation, manipulation, and annotation
  • HTML reports of SBML models at https://sbml4humans.de
  • interpolation functions to add experimental data to models
  • file converters (XPP)

The documentation is available on https://sbmlutils.readthedocs.io

If you have any questions or issues please open an issue

Funding

Matthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054) and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643. SBML4Humans was funded as part of Google Summer of Code 2021. Matthias König has received funds from the EOSCsecretariat.eu which has received funding from the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.

Files

matthiaskoenig/sbmlutils-0.5.4.zip

Files (42.7 MB)

Name Size Download all
md5:592641058a449925786ae00e335adbe6
42.7 MB Preview Download

Additional details

Funding

EOSCsecretariat.eu – EOSCsecretariat.eu 831644
European Commission