10.5281/zenodo.5521424
https://zenodo.org/records/5521424
oai:zenodo.org:5521424
Peter Peneder
Peter Peneder
Mappability .bigwig reference files for hg38/hg19; various read lengths
Zenodo
2021
mappability
bioinformatics
LIQUORICE
2021-09-24
eng
10.5281/zenodo.5521423
1.0.0
Creative Commons Attribution 4.0 International
This dataset contains reference mappability .bigwig files for the reference genomes hg38 and hg19, for various read lengths. The files were generated with the GEM library (https://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2) using this script (based on this work).
The files can be used as input for LIQUORICE (https://liquorice.readthedocs.io) - just select the file that matches your sequencing protocol (i.e. read length) and the reference genome of your mapped .bam files.