Published July 25, 2022 | Version 3
Dataset Open

JASPAR TFBS LOLA databases - Part 1

Creators

  • 1. Center for Molecular Medicine Norway
  • 2. Laboratoire Physiologie Cellulaire et Végétale, Univ. Grenoble Alpes
  • 3. Stanford Cancer Institute
  • 4. Department of Plant Biotechnology and Bioinformatics, Ghent University
  • 5. Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children's Hospital Research Institute, University of British Columbia
  • 6. Aix Marseille Univ, INSERM, TAGC, Marseille
  • 7. UCSC Genome Browser, University of California Santa Cruz
  • 8. Institute of Clinical Sciences, Faculty of Medicine, Imperial College London
  • 9. The Bioinformatics Centre, Department of Biology & Biotech Research and Innovation Centre, University of Copenhagen
  • 10. Bioinformatics Institute Ghent, Ghent University

Description

This repository contains the first part of the JASPAR 2022 LOLA databases used by the JASPAR TFBS enrichment tool. For each organism, we provide the LOLA databases for all JASPAR 2022 TFBS sets as compressed directories containing a set of .RDS R objects. Databases are organised by genome assembly.

Due to file sizes, we had to split the repository into two different parts. Part 2 of the repository containing the databases for human can be found here.

Files

Files (41.5 GB)

Name Size Download all
md5:ff3e1a2bd1812791fe5488ae23fbe612
915.4 MB Download
md5:fc0d527b33ee6fde52f72ddb201f5a7a
98.5 MB Download
md5:12c3cb4110ee5daac275018c3f90a6c2
98.5 MB Download
md5:6d53adebd4ac744945579ef22f3318ad
123.0 MB Download
md5:44680e8186fda8569d2e793cefbf9ca3
15.2 GB Download
md5:bfbb944f3b58f8a12447ba5c3a0e7a14
600.7 MB Download
md5:5b72455a9462c63119c841010363c89f
24.4 GB Download
md5:38158b45e1c83c0e7579106a8cc8cfca
32.2 MB Download