September 20, 2021 Dataset Open Access

de Almeida, Bernardo P

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{
  "description": "<p>This repository holds the&nbsp;trained DeepSTARR model&nbsp;and the data&nbsp;used to train and evaluate the model.</p>\n\n<p><strong>Files:</strong></p>\n\n<ul>\n\t<li><strong>&lt;set&gt;.fa</strong>\n\n\t<ul>\n\t\t<li>FASTA files with DNA sequences of genomic regions from train/val/test sets.</li>\n\t</ul>\n\t</li>\n\t<li><strong>&lt;set&gt;*.txt</strong>\n\t<ul>\n\t\t<li>Files with developmental and housekeeping activity of genomic regions from train/val/test sets.</li>\n\t</ul>\n\t</li>\n\t<li><strong>DeepSTARR.model.h5 </strong>and<strong>&nbsp;DeepSTARR.model.json</strong>\n\t<ul>\n\t\t<li>DeepSTARR Keras model</li>\n\t</ul>\n\t</li>\n</ul>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Research Institute of Molecular Pathology (IMP)", 
      "@id": "https://orcid.org/0000-0002-6084-6775", 
      "@type": "Person", 
      "name": "de Almeida, Bernardo P"
    }
  ], 
  "url": "https://zenodo.org/record/5502060", 
  "datePublished": "2021-09-20", 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/DeepSTARR.model.h5", 
      "encodingFormat": "h5", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/DeepSTARR.model.json", 
      "encodingFormat": "json", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/Sequences_activity_Test.txt", 
      "encodingFormat": "txt", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/Sequences_activity_Train.txt", 
      "encodingFormat": "txt", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/Sequences_activity_Val.txt", 
      "encodingFormat": "txt", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/Sequences_Test.fa", 
      "encodingFormat": "fa", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/Sequences_Train.fa", 
      "encodingFormat": "fa", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/74650a86-fe3f-4cd2-8986-a686b709437e/Sequences_Val.fa", 
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      "@type": "DataDownload"
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  ], 
  "identifier": "https://doi.org/10.5281/zenodo.5502060", 
  "@id": "https://doi.org/10.5281/zenodo.5502060", 
  "@type": "Dataset", 
  "name": "DeepSTARR manuscript data"
}