September 20, 2021 Dataset Open Access

de Almeida, Bernardo P

DataCite XML Export

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  <identifier identifierType="DOI">10.5281/zenodo.5502060</identifier>
  <creators>
    <creator>
      <creatorName>de Almeida, Bernardo P</creatorName>
      <givenName>Bernardo P</givenName>
      <familyName>de Almeida</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-6084-6775</nameIdentifier>
      <affiliation>Research Institute of Molecular Pathology (IMP)</affiliation>
    </creator>
  </creators>
  <titles>
    <title>DeepSTARR manuscript data</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-09-20</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/5502060</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.5502059</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This repository holds the&amp;nbsp;trained DeepSTARR model&amp;nbsp;and the data&amp;nbsp;used to train and evaluate the model.&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Files:&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;strong&gt;&amp;lt;set&amp;gt;.fa&lt;/strong&gt;

	&lt;ul&gt;
		&lt;li&gt;FASTA files with DNA sequences of genomic regions from train/val/test sets.&lt;/li&gt;
	&lt;/ul&gt;
	&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;&amp;lt;set&amp;gt;*.txt&lt;/strong&gt;
	&lt;ul&gt;
		&lt;li&gt;Files with developmental and housekeeping activity of genomic regions from train/val/test sets.&lt;/li&gt;
	&lt;/ul&gt;
	&lt;/li&gt;
	&lt;li&gt;&lt;strong&gt;DeepSTARR.model.h5 &lt;/strong&gt;and&lt;strong&gt;&amp;nbsp;DeepSTARR.model.json&lt;/strong&gt;
	&lt;ul&gt;
		&lt;li&gt;DeepSTARR Keras model&lt;/li&gt;
	&lt;/ul&gt;
	&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>