Dataset Open Access
<?xml version='1.0' encoding='utf-8'?> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#"> <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.5502060"> <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/> <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.5502060</dct:identifier> <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0002-6084-6775"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-6084-6775</dct:identifier> <foaf:name>de Almeida, Bernardo P</foaf:name> <foaf:givenName>Bernardo P</foaf:givenName> <foaf:familyName>de Almeida</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Research Institute of Molecular Pathology (IMP)</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:title>DeepSTARR manuscript data</dct:title> <dct:publisher> <foaf:Agent> <foaf:name>Zenodo</foaf:name> </foaf:Agent> </dct:publisher> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2021</dct:issued> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-09-20</dct:issued> <owl:sameAs rdf:resource="https://zenodo.org/record/5502060"/> <adms:identifier> <adms:Identifier> <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/5502060</skos:notation> <adms:schemeAgency>url</adms:schemeAgency> </adms:Identifier> </adms:identifier> <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.5502059"/> <dct:description><p>This repository holds the&nbsp;trained DeepSTARR model&nbsp;and the data&nbsp;used to train and evaluate the model.</p> <p><strong>Files:</strong></p> <ul> <li><strong>&lt;set&gt;.fa</strong> <ul> <li>FASTA files with DNA sequences of genomic regions from train/val/test sets.</li> </ul> </li> <li><strong>&lt;set&gt;*.txt</strong> <ul> <li>Files with developmental and housekeeping activity of genomic regions from train/val/test sets.</li> </ul> </li> <li><strong>DeepSTARR.model.h5 </strong>and<strong>&nbsp;DeepSTARR.model.json</strong> <ul> <li>DeepSTARR Keras model</li> </ul> </li> </ul></dct:description> <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/> <dct:accessRights> <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess"> <rdfs:label>Open Access</rdfs:label> </dct:RightsStatement> </dct:accessRights> <dcat:distribution> <dcat:Distribution> <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>2561720</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/DeepSTARR.model.h5"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>11615</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/DeepSTARR.model.json"/> <dcat:mediaType>application/json</dcat:mediaType> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>4476205</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/Sequences_activity_Test.txt"/> <dcat:mediaType>text/plain</dcat:mediaType> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>43682499</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/Sequences_activity_Train.txt"/> <dcat:mediaType>text/plain</dcat:mediaType> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>4409299</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/Sequences_activity_Val.txt"/> <dcat:mediaType>text/plain</dcat:mediaType> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>12025132</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/Sequences_Test.fa"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>116924268</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/Sequences_Train.fa"/> </dcat:Distribution> </dcat:distribution> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5502060"/> <dcat:byteSize>11760406</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/5502060/files/Sequences_Val.fa"/> </dcat:Distribution> </dcat:distribution> </rdf:Description> </rdf:RDF>
All versions | This version | |
---|---|---|
Views | 827 | 827 |
Downloads | 4,579 | 4,579 |
Data volume | 47.2 GB | 47.2 GB |
Unique views | 742 | 742 |
Unique downloads | 1,598 | 1,598 |