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Test dataset for ProteinID

Vaudel, Marc; Martens, Lennart; Sigloch, Florian Christoph


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  <identifier identifierType="DOI">10.5281/zenodo.546301</identifier>
  <creators>
    <creator>
      <creatorName>Vaudel, Marc</creatorName>
      <givenName>Marc</givenName>
      <familyName>Vaudel</familyName>
      <affiliation>PROBE Dept of Biomedicine</affiliation>
    </creator>
    <creator>
      <creatorName>Martens, Lennart</creatorName>
      <givenName>Lennart</givenName>
      <familyName>Martens</familyName>
      <affiliation>Department of Biochemistry, Ghent University, Ghent, Belgium. Department of Medical Protein Research, VIB, Ghent, Belgium.</affiliation>
    </creator>
    <creator>
      <creatorName>Sigloch, Florian Christoph</creatorName>
      <givenName>Florian Christoph</givenName>
      <familyName>Sigloch</familyName>
      <affiliation>Center for Biological Systems Analysis, University of Freiburg, Habsburger Str. 49, 79104 Freiburg, Germany.</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Test dataset for ProteinID</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>proteomics</subject>
    <subject>test data</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-04-15</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/546301</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsSupplementTo">10.1002/pmic.201300488</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="HasPart">https://www.ebi.ac.uk/pride/archive/projects/PXD000674</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://www.ebi.ac.uk/pride/archive/projects/PXD000674</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.796184</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This dataset can be used as an input for peptide and protein ID workflows. It was originally published in Vaudel et al., 2014, Proteomics (https://www.ncbi.nlm.nih.gov/pubmed/24678044).&lt;/p&gt;

&lt;p&gt;A detailed description of the "qExactive01819" sample can be found on PRIDE (https://www.ebi.ac.uk/pride/archive/projects/PXD000674).&lt;/p&gt;

&lt;p&gt;The provided FASTA protein database is the uniprot human reference database with the Crap database added. The second database additionally contains the most common mycoplasma contaminants. A detailed description of the provided databases can be found here: https://galaxyproject.github.io/training-material//Proteomics/tutorials/database-handling&lt;/p&gt;</description>
    <description descriptionType="Other">{"references": ["Drexler and Uphoff, Cytotechnology, 2002. doi:10.1023/A:1022913015916"]}</description>
  </descriptions>
</resource>
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