There is a newer version of this record available.

Dataset Open Access

Test dataset for ProteinID

Vaudel, Marc; Martens, Lennart; Sigloch, Florian Christoph


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.546301">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.546301</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Vaudel, Marc</foaf:name>
        <foaf:givenName>Marc</foaf:givenName>
        <foaf:familyName>Vaudel</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>PROBE Dept of Biomedicine</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Martens, Lennart</foaf:name>
        <foaf:givenName>Lennart</foaf:givenName>
        <foaf:familyName>Martens</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, Ghent University, Ghent, Belgium. Department of Medical Protein Research, VIB, Ghent, Belgium.</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Sigloch, Florian Christoph</foaf:name>
        <foaf:givenName>Florian Christoph</foaf:givenName>
        <foaf:familyName>Sigloch</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Center for Biological Systems Analysis, University of Freiburg, Habsburger Str. 49, 79104 Freiburg, Germany.</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Test dataset for ProteinID</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2017</dct:issued>
    <dcat:keyword>proteomics</dcat:keyword>
    <dcat:keyword>test data</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2017-04-15</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/546301"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/546301</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:relation rdf:resource="https://doi.org/10.1002/pmic.201300488"/>
    <dct:hasPart rdf:resource="https://www.ebi.ac.uk/pride/archive/projects/PXD000674"/>
    <dct:relation rdf:resource="https://www.ebi.ac.uk/pride/archive/projects/PXD000674"/>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.796184"/>
    <dct:description>&lt;p&gt;This dataset can be used as an input for peptide and protein ID workflows. It was originally published in Vaudel et al., 2014, Proteomics (https://www.ncbi.nlm.nih.gov/pubmed/24678044).&lt;/p&gt; &lt;p&gt;A detailed description of the "qExactive01819" sample can be found on PRIDE (https://www.ebi.ac.uk/pride/archive/projects/PXD000674).&lt;/p&gt; &lt;p&gt;The provided FASTA protein database is the uniprot human reference database with the Crap database added. The second database additionally contains the most common mycoplasma contaminants. A detailed description of the provided databases can be found here: https://galaxyproject.github.io/training-material//Proteomics/tutorials/database-handling&lt;/p&gt;</dct:description>
    <dct:description>{"references": ["Drexler and Uphoff, Cytotechnology, 2002. doi:10.1023/A:1022913015916"]}</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
        <dcat:byteSize>13207844</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/546301/files/Human_database_(cRAP_added).fasta"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
        <dcat:byteSize>15113913</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/546301/files/Human_database_(cRAP_and_Mycoplasma_added).fasta"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
        <dcat:byteSize>39901763</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/546301/files/qExactive01819.mgf"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
        <dcat:byteSize>928053916</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/546301/files/qExactive01819_profile.mzml"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
        <dcat:byteSize>340575239</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/546301/files/qExactive01819.raw"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.546301"/>
        <dcat:byteSize>131996040</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/546301/files/qExactive01819_vendor-peakPicking.mzml"/>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
15,052
31,415
views
downloads
All versions This version
Views 15,0527,631
Downloads 31,415518
Data volume 9.8 TB128.2 GB
Unique views 12,8067,257
Unique downloads 20,783206

Share

Cite as