Dataset Open Access

Collection of textures in colorectal cancer histology

Kather, Jakob Nikolas; Zöllner, Frank Gerrit; Bianconi, Francesco; Melchers, Susanne M; Schad, Lothar R; Gaiser, Timo; Marx, Alexander; Weis, Cleo-Aron


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        <foaf:name>Kather, Jakob Nikolas</foaf:name>
        <foaf:givenName>Jakob Nikolas</foaf:givenName>
        <foaf:familyName>Kather</foaf:familyName>
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            <foaf:name>Institute of Pathology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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        <foaf:name>Zöllner, Frank Gerrit</foaf:name>
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            <foaf:name>Institute of Computer Assisted Clinical Medicine, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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        <foaf:name>Bianconi, Francesco</foaf:name>
        <foaf:givenName>Francesco</foaf:givenName>
        <foaf:familyName>Bianconi</foaf:familyName>
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          <foaf:Organization>
            <foaf:name>Department of Engineering, University of Perugia, Perugia, Italy</foaf:name>
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        <foaf:name>Melchers, Susanne M</foaf:name>
        <foaf:givenName>Susanne M</foaf:givenName>
        <foaf:familyName>Melchers</foaf:familyName>
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          <foaf:Organization>
            <foaf:name>Department of Dermatology, Venereology and Allergology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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        <foaf:name>Schad, Lothar R</foaf:name>
        <foaf:givenName>Lothar R</foaf:givenName>
        <foaf:familyName>Schad</foaf:familyName>
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          <foaf:Organization>
            <foaf:name>Institute of Computer Assisted Clinical Medicine, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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        <foaf:name>Gaiser, Timo</foaf:name>
        <foaf:givenName>Timo</foaf:givenName>
        <foaf:familyName>Gaiser</foaf:familyName>
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          <foaf:Organization>
            <foaf:name>Institute of Pathology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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        <foaf:name>Marx, Alexander</foaf:name>
        <foaf:givenName>Alexander</foaf:givenName>
        <foaf:familyName>Marx</foaf:familyName>
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            <foaf:name>Institute of Pathology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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        <foaf:name>Weis, Cleo-Aron</foaf:name>
        <foaf:givenName>Cleo-Aron</foaf:givenName>
        <foaf:familyName>Weis</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Institute of Pathology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany</foaf:name>
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    <dct:title>Collection of textures in colorectal cancer histology</dct:title>
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    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2016</dct:issued>
    <dcat:keyword>Histology</dcat:keyword>
    <dcat:keyword>Texture Analysis</dcat:keyword>
    <dcat:keyword>Colorectal Cancer</dcat:keyword>
    <dcat:keyword>Image Database</dcat:keyword>
    <dcat:keyword>Image Processing</dcat:keyword>
    <dcat:keyword>Image Analysis</dcat:keyword>
    <dcat:keyword>Histopathology</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2016-05-26</dct:issued>
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    <dct:description>&lt;p&gt;&lt;strong&gt;Content&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;This data set represents a collection of textures in histological images of human colorectal cancer. It contains two files:&lt;/p&gt; &lt;ol&gt; &lt;li&gt;&amp;quot;Kather_texture_2016_image_tiles_5000.zip&amp;quot;: a zipped folder containing 5000 histological images of 150 * 150 px each (74 * 74 &amp;micro;m). Each image belongs to exactly one of eight tissue categories (specified by the folder name).&amp;nbsp;&lt;/li&gt; &lt;li&gt;&amp;quot;Kather_texture_2016_larger_images_10.zip&amp;quot;: a zipped folder containing 10 larger histological images of 5000 x 5000 px each. These images contain more than one tissue type.&amp;nbsp;&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;&lt;strong&gt;Image format&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;All images are RGB, 0.495 &amp;micro;m per pixel, digitized with an&amp;nbsp;Aperio&amp;nbsp;ScanScope (Aperio/Leica biosystems),&amp;nbsp;magnification 20x. Histological samples are fully anonymized images of formalin-fixed paraffin-embedded human colorectal adenocarcinomas (primary tumors)&amp;nbsp;from our pathology archive (Institute of Pathology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany).&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Ethics statement&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;All experiments were approved by the institutional ethics board (medical ethics board II, University Medical Center Mannheim, Heidelberg University, Germany; approval 2015-868R-MA). The institutional ethics board waived the need for informed consent for this retrospective analysis of anonymized samples. All experiments were carried out in accordance with the approved guidelines and with the Declaration of Helsinki.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;More information / data usage&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;For more information, please refer to the following article.&amp;nbsp;&lt;strong&gt;Please cite this article when using the data set.&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Kather JN, Weis CA, Bianconi F, Melchers SM, Schad LR, Gaiser T, Marx A, Zollner F: Multi-class texture analysis in colorectal cancer histology (2016), Scientific Reports (in press)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Contact&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;For questions, please contact:&lt;br /&gt; Dr. Jakob Nikolas Kather&lt;br /&gt; http://orcid.org/0000-0002-3730-5348&lt;br /&gt; ResearcherID: D-4279-2015&lt;/p&gt;</dct:description>
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        <rdfs:label>Open Access</rdfs:label>
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