Journal article Open Access

Reference-Guided Scaffolding of Worldwide Fraxinus Species, Set 2

Matthew Huff; Josiah Seaman; Di Wu; Tetyana Zhebentyayeva; Laura Kelly; Nurul Faridi; Charles Dana Nelson; Endymion Cooper; Enrico Bonello; Teodora Best; Kim Steiner; Jennifer Koch; Jeanne Romero-Severson; John E. Carlson; Richard Buggs; Margaret Staton


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.5177226">
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.5177226</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Matthew Huff</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Knoxville, TN, United States</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Josiah Seaman</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Di Wu</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Tetyana Zhebentyayeva</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Laura Kelly</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Nurul Faridi</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Ecosystem Science and Management, Texas A&amp;M University, College Station, Texas, USA.; USDA Forest Service, Southern Research Station, Saucier, Mississippi, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Charles Dana Nelson</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>USDA Forest Service, Southern Research Station, Saucier, Mississippi, USA; Forest Health Research and Education Center, University of Kentucky, Lexington, Kentucky, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Endymion Cooper</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>School of Biological and Chemical Sciences, Queen Mary University of London, London, UK</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Enrico Bonello</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Plant Pathology, The Ohio State University, Columbus, Ohio, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Teodora Best</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Kim Steiner</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Jennifer Koch</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>United States Department of Agriculture, Forest Service, Northern Research Station, Delaware, Ohio, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Jeanne Romero-Severson</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biological Sciences, Notre Dame University, 46556 Notre Dame, Indiana, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>John E. Carlson</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-4495-3738">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-4495-3738</dct:identifier>
        <foaf:name>Richard Buggs</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Margaret Staton</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Knoxville, TN, United States</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Reference-Guided Scaffolding of Worldwide Fraxinus Species, Set 2</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2021</dct:issued>
    <dcat:keyword>Ash species conservation</dcat:keyword>
    <dcat:keyword>Comparative genomics</dcat:keyword>
    <dcat:keyword>Reference-guided scaffolding</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-08-10</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/5177226"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/5177226</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.5177225"/>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/ash-tree-genome-analysis-fraxinus-species"/>
    <dct:description>&lt;p&gt;Following the recent assembly of the chromosome-level &lt;em&gt;Fraxinus pennsylvanica &lt;/em&gt;genome, we used the assembly to construct reference-guided assemblies of 27 previously sequenced &lt;em&gt;Fraxinus &lt;/em&gt;taxa, including &lt;em&gt;Fraxinus excelsior&lt;/em&gt;. Thus we present a significant step forward in genomic resources for research and protection of &lt;em&gt;Fraxinus &lt;/em&gt;species.&lt;/p&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>203796967</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_platypoda_v.0.2.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>218685751</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_quadrangulata_v.0.3.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>278363355</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_sieboldiana_v.0.3.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>290374904</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_sp1973-6204_v.0.2.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>228745148</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_spD2006-0159_v.0.2.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>227408981</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_velutina_v.0.3.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.5177226"/>
        <dcat:byteSize>204768896</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/5177226/files/Fraxinus_xanthoxyloides_v.0.2.tar.gz"/>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
140
54
views
downloads
All versions This version
Views 140140
Downloads 5454
Data volume 12.5 GB12.5 GB
Unique views 136136
Unique downloads 1717

Share

Cite as