Dataset Open Access
Matthew Huff;
Josiah Seaman;
Di Wu;
Tetyana Zhebentyayeva;
Laura Kelly;
Nurul Faridi;
Charles Dana Nelson;
Endymion Cooper;
Enrico Bonello;
Teodora Best;
Kim Steiner;
Jennifer Koch;
Jeanne Romero-Severson;
John E. Carlson;
Richard Buggs;
Margaret Staton
{ "description": "<p>Following the recent assembly of the chromosome-level <em>Fraxinus pennsylvanica </em>genome, we used the assembly to construct reference-guided assemblies of 27 previously sequenced <em>Fraxinus </em>taxa, including <em>Fraxinus excelsior</em>. Thus we present a significant step forward in genomic resources for research and protection of <em>Fraxinus </em>species.</p>", "license": "https://creativecommons.org/licenses/by/4.0/legalcode", "creator": [ { "affiliation": "Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Knoxville, TN, United States", "@type": "Person", "name": "Matthew Huff" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK", "@type": "Person", "name": "Josiah Seaman" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "@type": "Person", "name": "Di Wu" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "@type": "Person", "name": "Tetyana Zhebentyayeva" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK", "@type": "Person", "name": "Laura Kelly" }, { "affiliation": "Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas, USA.; USDA Forest Service, Southern Research Station, Saucier, Mississippi, USA", "@type": "Person", "name": "Nurul Faridi" }, { "affiliation": "USDA Forest Service, Southern Research Station, Saucier, Mississippi, USA; Forest Health Research and Education Center, University of Kentucky, Lexington, Kentucky, USA", "@type": "Person", "name": "Charles Dana Nelson" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK", "@type": "Person", "name": "Endymion Cooper" }, { "affiliation": "Department of Plant Pathology, The Ohio State University, Columbus, Ohio, USA", "@type": "Person", "name": "Enrico Bonello" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "@type": "Person", "name": "Teodora Best" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "@type": "Person", "name": "Kim Steiner" }, { "affiliation": "United States Department of Agriculture, Forest Service, Northern Research Station, Delaware, Ohio, USA", "@type": "Person", "name": "Jennifer Koch" }, { "affiliation": "Department of Biological Sciences, Notre Dame University, 46556 Notre Dame, Indiana, USA", "@type": "Person", "name": "Jeanne Romero-Severson" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "@type": "Person", "name": "John E. Carlson" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK", "@id": "https://orcid.org/0000-0003-4495-3738", "@type": "Person", "name": "Richard Buggs" }, { "affiliation": "Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Knoxville, TN, United States", "@type": "Person", "name": "Margaret Staton" } ], "url": "https://zenodo.org/record/5177206", "datePublished": "2021-08-10", "keywords": [ "Ash species conservation", "Comparative genomics", "Reference-guided scaffolding" ], "@context": "https://schema.org/", "distribution": [ { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_albicans_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_americana_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_angustifolia_subsp_angustifolia_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_angustifolia_subsp_oxycarpa_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_angustifolia_subsp_syriaca_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_anomala_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_apertisquamifera_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_baroniana_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_cuspidata_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_dipetala_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_excelsior_v.0.7.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_floribunda_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_goodingii_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_greggii_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_griffithii_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_latifolia_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_mandshurica_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_nigra_v.0.2.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_ornus_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" }, { "contentUrl": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_paxiana_v.0.3.tar.gz", "encodingFormat": "gz", "@type": "DataDownload" } ], "identifier": "https://doi.org/10.5281/zenodo.5177206", "@id": "https://doi.org/10.5281/zenodo.5177206", "@type": "Dataset", "name": "Reference-Guided Scaffolding of Worldwide Fraxinus Species, Set 1" }
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