Dataset Open Access
Matthew Huff;
Josiah Seaman;
Di Wu;
Tetyana Zhebentyayeva;
Laura Kelly;
Nurul Faridi;
Charles Dana Nelson;
Endymion Cooper;
Enrico Bonello;
Teodora Best;
Kim Steiner;
Jennifer Koch;
Jeanne Romero-Severson;
John E. Carlson;
Richard Buggs;
Margaret Staton
{ "files": [ { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_albicans_v.0.2.tar.gz" }, "checksum": "md5:073839e70abe7a0588dc39b9dd1dddde", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_albicans_v.0.2.tar.gz", "type": "gz", "size": 231485091 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_americana_v.0.2.tar.gz" }, "checksum": "md5:65727824d6461cc6074fd94c5d91e288", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_americana_v.0.2.tar.gz", "type": "gz", "size": 212774797 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_angustifolia_subsp_angustifolia_v.0.3.tar.gz" }, "checksum": "md5:5442b170637d016f0f869754d43e2aea", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_angustifolia_subsp_angustifolia_v.0.3.tar.gz", "type": "gz", "size": 243624244 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_angustifolia_subsp_oxycarpa_v.0.2.tar.gz" }, "checksum": "md5:ddc8a1fc3e9e8cf5f21445817a1cbe42", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_angustifolia_subsp_oxycarpa_v.0.2.tar.gz", "type": "gz", "size": 232448504 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_angustifolia_subsp_syriaca_v.0.2.tar.gz" }, "checksum": "md5:40167bd2cee09bc1af67c761fc48a63e", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_angustifolia_subsp_syriaca_v.0.2.tar.gz", "type": "gz", "size": 196322245 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_anomala_v.0.2.tar.gz" }, "checksum": "md5:e8b03ada2025a745ab66de3db1287a76", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_anomala_v.0.2.tar.gz", "type": "gz", "size": 215078160 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_apertisquamifera_v.0.3.tar.gz" }, "checksum": "md5:c007260ba0c26c8bacce0449fe861ebb", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_apertisquamifera_v.0.3.tar.gz", "type": "gz", "size": 355724479 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_baroniana_v.0.2.tar.gz" }, "checksum": "md5:0815612d19bc06d6dbd5c6314de72279", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_baroniana_v.0.2.tar.gz", "type": "gz", "size": 232135199 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_cuspidata_v.0.2.tar.gz" }, "checksum": "md5:025defc2f0b0c57c5763b6324ca44ae0", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_cuspidata_v.0.2.tar.gz", "type": "gz", "size": 206284506 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_dipetala_v.0.3.tar.gz" }, "checksum": "md5:844d7237b74950582942051f832ec2a6", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_dipetala_v.0.3.tar.gz", "type": "gz", "size": 207346999 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_excelsior_v.0.7.tar.gz" }, "checksum": "md5:dd1629ac6f6eacdfce2e4705ece03462", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_excelsior_v.0.7.tar.gz", "type": "gz", "size": 236962497 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_floribunda_v.0.2.tar.gz" }, "checksum": "md5:e5f1d718dbe5deba8034f917aa9d1c37", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_floribunda_v.0.2.tar.gz", "type": "gz", "size": 230585981 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_goodingii_v.0.2.tar.gz" }, "checksum": "md5:6f3d21bafb5fdf3283ccd8d49d305553", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_goodingii_v.0.2.tar.gz", "type": "gz", "size": 270711654 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_greggii_v.0.2.tar.gz" }, "checksum": "md5:8810559b5401add0685dfa279c5a3603", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_greggii_v.0.2.tar.gz", "type": "gz", "size": 225002074 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_griffithii_v.0.2.tar.gz" }, "checksum": "md5:2ccd70709567b34f0d7d778d13d83e90", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_griffithii_v.0.2.tar.gz", "type": "gz", "size": 239273286 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_latifolia_v.0.3.tar.gz" }, "checksum": "md5:877f3b0934397c2383ca411c97c27cb4", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_latifolia_v.0.3.tar.gz", "type": "gz", "size": 253011297 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_mandshurica_v.0.3.tar.gz" }, "checksum": "md5:d8219c932f66facb78e0afda5faef936", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_mandshurica_v.0.3.tar.gz", "type": "gz", "size": 239019748 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_nigra_v.0.2.tar.gz" }, "checksum": "md5:a7305f24ae74586b4db61340aa9a9de8", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_nigra_v.0.2.tar.gz", "type": "gz", "size": 202535655 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_ornus_v.0.3.tar.gz" }, "checksum": "md5:bf6219e4394aa6837a38d93628841f51", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_ornus_v.0.3.tar.gz", "type": "gz", "size": 253824713 }, { "links": { "self": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f/Fraxinus_paxiana_v.0.3.tar.gz" }, "checksum": "md5:4431024c8308f4e0c3b5c14ebe729a35", "bucket": "27ba8d5a-6b90-4aba-8627-751653317a4f", "key": "Fraxinus_paxiana_v.0.3.tar.gz", "type": "gz", "size": 223513884 } ], "owners": [ 247406 ], "doi": "10.5281/zenodo.5177206", "stats": { "version_unique_downloads": 101.0, "unique_views": 275.0, "views": 311.0, "version_views": 311.0, "unique_downloads": 101.0, "version_unique_views": 275.0, "volume": 218650307764.0, "version_downloads": 854.0, "downloads": 854.0, "version_volume": 218650307764.0 }, "links": { "doi": "https://doi.org/10.5281/zenodo.5177206", "conceptdoi": "https://doi.org/10.5281/zenodo.5177205", "bucket": "https://zenodo.org/api/files/27ba8d5a-6b90-4aba-8627-751653317a4f", "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.5177205.svg", "html": "https://zenodo.org/record/5177206", "latest_html": "https://zenodo.org/record/5177206", "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.5177206.svg", "latest": "https://zenodo.org/api/records/5177206" }, "conceptdoi": "10.5281/zenodo.5177205", "created": "2021-08-10T22:49:33.014851+00:00", "updated": "2021-08-11T07:56:41.421756+00:00", "conceptrecid": "5177205", "revision": 3, "id": 5177206, "metadata": { "access_right_category": "success", "doi": "10.5281/zenodo.5177206", "description": "<p>Following the recent assembly of the chromosome-level <em>Fraxinus pennsylvanica </em>genome, we used the assembly to construct reference-guided assemblies of 27 previously sequenced <em>Fraxinus </em>taxa, including <em>Fraxinus excelsior</em>. Thus we present a significant step forward in genomic resources for research and protection of <em>Fraxinus </em>species.</p>", "license": { "id": "CC-BY-4.0" }, "title": "Reference-Guided Scaffolding of Worldwide Fraxinus Species, Set 1", "relations": { "version": [ { "count": 1, "index": 0, "parent": { "pid_type": "recid", "pid_value": "5177205" }, "is_last": true, "last_child": { "pid_type": "recid", "pid_value": "5177206" } } ] }, "communities": [ { "id": "ash-tree-genome-analysis-fraxinus-species" } ], "keywords": [ "Ash species conservation", "Comparative genomics", "Reference-guided scaffolding" ], "publication_date": "2021-08-10", "creators": [ { "affiliation": "Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Knoxville, TN, United States", "name": "Matthew Huff" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK", "name": "Josiah Seaman" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "name": "Di Wu" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "name": "Tetyana Zhebentyayeva" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK", "name": "Laura Kelly" }, { "affiliation": "Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas, USA.; USDA Forest Service, Southern Research Station, Saucier, Mississippi, USA", "name": "Nurul Faridi" }, { "affiliation": "USDA Forest Service, Southern Research Station, Saucier, Mississippi, USA; Forest Health Research and Education Center, University of Kentucky, Lexington, Kentucky, USA", "name": "Charles Dana Nelson" }, { "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK", "name": "Endymion Cooper" }, { "affiliation": "Department of Plant Pathology, The Ohio State University, Columbus, Ohio, USA", "name": "Enrico Bonello" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "name": "Teodora Best" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "name": "Kim Steiner" }, { "affiliation": "United States Department of Agriculture, Forest Service, Northern Research Station, Delaware, Ohio, USA", "name": "Jennifer Koch" }, { "affiliation": "Department of Biological Sciences, Notre Dame University, 46556 Notre Dame, Indiana, USA", "name": "Jeanne Romero-Severson" }, { "affiliation": "Department of Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, USA", "name": "John E. Carlson" }, { "orcid": "0000-0003-4495-3738", "affiliation": "School of Biological and Chemical Sciences, Queen Mary University of London, London, UK; Royal Botanic Gardens, Kew, Richmond, Surrey, UK", "name": "Richard Buggs" }, { "affiliation": "Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Knoxville, TN, United States", "name": "Margaret Staton" } ], "access_right": "open", "resource_type": { "type": "dataset", "title": "Dataset" }, "related_identifiers": [ { "scheme": "doi", "identifier": "10.5281/zenodo.5177205", "relation": "isVersionOf" } ] } }
All versions | This version | |
---|---|---|
Views | 311 | 311 |
Downloads | 854 | 854 |
Data volume | 218.7 GB | 218.7 GB |
Unique views | 275 | 275 |
Unique downloads | 101 | 101 |