This function calculates the expected number true transmission pairs in a sample of size M
.
Assumptions about transmission and linkage (single or multiple) can be specified.
true_pairs(eta, rho, M, R = NULL, assumption = "mtml")
eta | scalar or vector giving the sensitivity of the linkage criteria |
---|---|
rho | scalar or vector giving the proportion of the final outbreak size that is sampled |
M | scalar or vector giving the number of cases sampled |
R | scalar or vector giving the effective reproductive number of the pathogen (default=NULL) |
assumption | a character vector indicating which assumptions about transmission and linkage criteria. Default =
|
scalar or vector giving the expected number of true transmission pairs in the sample
Other true_pairs:
true_pairs_mtml()
,
true_pairs_mtsl()
,
true_pairs_stsl()
John Giles, Shirlee Wohl, and Justin Lessler
true_pairs(eta=0.99, rho=0.75, M=100, R=1)#>#> [1] 74.25