R/phylosamp_funcs.R
true_pairs_stsl.Rd
This function calculates the expected number of true transmission pairs in a sample of size M
.
The single-transmission and single-linkage method assumes the following:
Each case \(i\) is linked by transmissino to only one other case \(j\) in the population (\(N\)).
Each case \(i\) is linked by the linkage criteria to only one other case \(j\) in the sampled population (\(M\)).
true_pairs_stsl(eta, rho, M)
eta | scalar or vector giving the sensitivity of the linkage criteria |
---|---|
rho | scalar or vector giving the proportion of the final outbreak size that is sampled |
M | scalar or vector giving the number of cases sampled |
scalar or vector giving the expected number of true transmission pairs in the sample
Other true_pairs:
true_pairs_mtml()
,
true_pairs_mtsl()
,
true_pairs()
John Giles, Shirlee Wohl, and Justin Lessler
true_pairs_stsl(eta=0.95, rho=0.2, M=200)#> [1] 19