R/phylosamp_funcs.R
true_pairs_mtsl.Rd
This function calculates the expected number true transmission pairs in a sample of size M
.
The multiple-transmission and single-linkage method assumes the following:
Each case \(i\) is, on average, the infector of R
cases in the population (\(N\))
Each case \(i\) is allowed to be linked by the linkage criteria to only one other case \(j\) in the sampled population (\(M\)).
true_pairs_mtsl(eta, rho, M, R)
eta | scalar or vector giving the sensitivity of the linkage criteria |
---|---|
rho | scalar or vector giving the proportion of the final outbreak size that is sampled |
M | scalar or vector giving the number of cases sampled |
R | scalar or vector giving the effective reproductive number of the pathogen |
scalar or vector giving the expected number of true transmission pairs in the sample
Other true_pairs:
true_pairs_mtml()
,
true_pairs_stsl()
,
true_pairs()
John Giles, Shirlee Wohl and Justin Lessler
true_pairs_mtsl(eta=0.95, rho=0.2, M=200, R=1)#> [1] 38