Preprint Open Access

LipidQuant 1.0: automated data processing in lipid class separation - mass spectrometry quantitative workflows

Wolrab, Denise; Cífková, Eva; Čáň, Pavel; Lísa, Miroslav; Peterka, Ondřej; Chocholoušková, Michaela; Jirásko, Robert; Holčapek, Michal


Dublin Core Export

<?xml version='1.0' encoding='utf-8'?>
<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Wolrab, Denise</dc:creator>
  <dc:creator>Cífková, Eva</dc:creator>
  <dc:creator>Čáň, Pavel</dc:creator>
  <dc:creator>Lísa, Miroslav</dc:creator>
  <dc:creator>Peterka, Ondřej</dc:creator>
  <dc:creator>Chocholoušková, Michaela</dc:creator>
  <dc:creator>Jirásko, Robert</dc:creator>
  <dc:creator>Holčapek, Michal</dc:creator>
  <dc:date>2021-06-04</dc:date>
  <dc:description>We present the LipidQuant 1.0 tool for automated data processing workflows in lipidomic quantitation based on lipid class separation coupled with high-resolution mass spectrometry. Lipid class separation workflows, such as hydrophilic interaction liquid chromatography or supercritical fluid chromatography, should be preferred in lipidomic quantitation due to the coionization of lipid class internal standards with analytes from the same class. The individual steps in the LipidQuant workflow are explained, including lipid identification, quantitation, isotopic correction, and reporting results. We show the application of LipidQuant data processing to a small cohort of human serum samples.</dc:description>
  <dc:identifier>https://zenodo.org/record/5151201</dc:identifier>
  <dc:identifier>10.5281/zenodo.5151201</dc:identifier>
  <dc:identifier>oai:zenodo.org:5151201</dc:identifier>
  <dc:language>eng</dc:language>
  <dc:relation>doi:10.5281/zenodo.4899684</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:source>Bioinformatics</dc:source>
  <dc:subject>Lipidomics</dc:subject>
  <dc:subject>Mass spectrometry</dc:subject>
  <dc:subject>Data processing</dc:subject>
  <dc:subject>Quantitation</dc:subject>
  <dc:title>LipidQuant 1.0: automated data processing in lipid class separation - mass spectrometry quantitative workflows</dc:title>
  <dc:type>info:eu-repo/semantics/preprint</dc:type>
  <dc:type>publication-preprint</dc:type>
</oai_dc:dc>
359
449
views
downloads
All versions This version
Views 359272
Downloads 449338
Data volume 4.9 GB4.9 GB
Unique views 283232
Unique downloads 263196

Share

Cite as