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venelin/PCMBase: Some new functionality and bug fixes

Venelin Mitov; Georgios Asimomitis; krzbar

  • Added function PCMTreeInsertTipsOrSingletons.
  • Added possibility to specify metaI as a character string (function name) rather. So far, it was only possible to specify this as a function object or as the list resulting from calling the function on the tree, data and PCM model.
  • Added an operator + for PCMTree objects. This is analogical to the operator + for phylo objects but maintains the edge.part and part.regime members (experimental).
  • Removed argument parametrizations from PCMGenerateModelTypes. Now it's possible to specify the type of parametrization (all/default) separately for each model type.
  • Added automatic generation of White noise model types.
  • Improved man pages.
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