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ahmedmagds/GNUVID: GNUVID v2.3

Ahmed M Moustafa

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&lt;li&gt;999,106 High Quality GISAID sequences have been included in this analysis from a total of 2,012,563 sequences.&lt;/li&gt;
&lt;li&gt;GNUVID compressed the 9991060 ORFs in the 999106 genomes to 549768 unique alleles.&lt;/li&gt;
&lt;li&gt;523727 Sequence Types (STs) have been assigned in this dataset and were clustered in 2888 clonal complexes (CCs).&lt;/li&gt;
&lt;li&gt;GNUVID now reports the WHO Naming system for VOCs/VOIs (e.g. Alpha, Beta..etc) as per the WHO updated on 07/06/2021.&lt;/li&gt;
&lt;li&gt;GNUVID now excludes genomes that does not pass quality check for sequence length (20000) and proportion of ambiguity (Ns) (0.3). User can change these cutoffs.&lt;/li&gt;
&lt;li&gt;A table showing summary information of the 177 Active Clonal Complexes (CCs) can be found &lt;a href=""&gt;here&lt;/a&gt;. A full report for the 2888 CCs can be found &lt;a href=""&gt;here&lt;/a&gt;&lt;/li&gt;
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