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ahmedmagds/GNUVID: GNUVID v2.3

Ahmed M Moustafa


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  <dc:creator>Ahmed M Moustafa</dc:creator>
  <dc:date>2021-07-20</dc:date>
  <dc:description>
999,106 High Quality GISAID sequences have been included in this analysis from a total of 2,012,563 sequences.
GNUVID compressed the 9991060 ORFs in the 999106 genomes to 549768 unique alleles.
523727 Sequence Types (STs) have been assigned in this dataset and were clustered in 2888 clonal complexes (CCs).
GNUVID now reports the WHO Naming system for VOCs/VOIs (e.g. Alpha, Beta..etc) as per the WHO updated on 07/06/2021.
GNUVID now excludes genomes that does not pass quality check for sequence length (20000) and proportion of ambiguity (Ns) (0.3). User can change these cutoffs.
A table showing summary information of the 177 Active Clonal Complexes (CCs) can be found here. A full report for the 2888 CCs can be found here
</dc:description>
  <dc:identifier>https://zenodo.org/record/5115432</dc:identifier>
  <dc:identifier>10.5281/zenodo.5115432</dc:identifier>
  <dc:identifier>oai:zenodo.org:5115432</dc:identifier>
  <dc:relation>url:https://github.com/ahmedmagds/GNUVID/tree/v2.3</dc:relation>
  <dc:relation>doi:10.5281/zenodo.3927062</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/covid-19</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/zenodo</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>ahmedmagds/GNUVID: GNUVID v2.3</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
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