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ahmedmagds/GNUVID: GNUVID v2.3

Ahmed M Moustafa


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    "description": "<ul>\n<li>999,106 High Quality GISAID sequences have been included in this analysis from a total of 2,012,563 sequences.</li>\n<li>GNUVID compressed the 9991060 ORFs in the 999106 genomes to 549768 unique alleles.</li>\n<li>523727 Sequence Types (STs) have been assigned in this dataset and were clustered in 2888 clonal complexes (CCs).</li>\n<li>GNUVID now reports the WHO Naming system for VOCs/VOIs (e.g. Alpha, Beta..etc) as per the WHO updated on 07/06/2021.</li>\n<li>GNUVID now excludes genomes that does not pass quality check for sequence length (20000) and proportion of ambiguity (Ns) (0.3). User can change these cutoffs.</li>\n<li>A table showing summary information of the 177 Active Clonal Complexes (CCs) can be found <a href=\"https://github.com/ahmedmagds/GNUVID/tree/master/db\">here</a>. A full report for the 2888 CCs can be found <a href=\"https://github.com/ahmedmagds/GNUVID/blob/master/db/GNUVID_06212021_CCs_report.txt\">here</a></li>\n</ul>", 
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