ExploreASL/ExploreASL: ExploreASL v1.7.0

ExploreASL v1.7.0 Versions included software

Versions included & used third-party tools (see /External/README_SPM.txt):

• SPM12 7219
• CAT12 r1615
• LST 2.0.15

• Issue #455: Automatically compare results of TestDataSets with a saved reference results
• Issues #480, #623, #649, #661: Restructure x: x.opts (input arguments and their derivatives), x.dir (directories), x.settings (mostly booleans for pipeline settings), x.dataset (dataset related fields), x.external, ...
• Issue #572: Restructure JSON handling during NiFTI to BIDS import
• Issue #580: Add parsing of Gold Standard Phantoms ASL-DRO
• Issues #588, #612: ExploreASL reads folders and automatically searches for sourceStructure, studyPar and dataPar JSON files
• Issue #600: Put participants.tsv to the derivatives folder during import to legacy ExploreASL format
• Issue #602: Remove option for cloning the NIfTI output after import as BIDS directory is a read-only archive
• Issue #603: Give ExploreASL version in JSON files after BIDS to Legacy conversion
• Issue #631: Remove repeated warnings
• Issue #632: Add comparison script for untouched NIfTI comparison
• Issue #643: bids.layout: avoid printing the same warning repetitively in case multiple scans in a data set have the same issue
• Issue #656: Improve warnings (data loading)

• Issue #583: Proper testing of flavors using ExploreASL_Master
• Issue #584: Print the subject name depending on the existence of its definition in x.SUBJECT to avoid crashes for error reporting in the population module
• Issue #586: Avoid crashing xASL_adm_GetPopulationSessions if no sessions are found
• Issue #591: MultiTE import puts TE before PLD in the time series and corrects the JSON output
• Issue #618: Add session name to all M0Check and ASLCheck QC files in the Population folder
• Issue #620: xASL_adm_GzipAllFiles: Allow spaces in an input path for macOS/Linux
• Issue #625: Fix bug related to session format
• Issue #627: Remove a BIDS fiels and BIDS2Legacy should crash and show you why it crashed
• Issue #628: Fix parsing sessions and runs for converting rawdata to derivatives
• Issue #630: Move creation of population folder
• Issue #646: Improve BIDS warnings
• Issue #652: xASL_vis_CreateVisualFig: allow empty overlays
• Issue #659: xASL_stat_PrintStats: Fix visits bug (legacy format)
• Issue #655: xASL_adm_GetPopulationSessions gave incorrect warnings
• Issue #666: Warning when multiple dataPar*.json or studyPar*.json or sourcestructure*.json are present
• Issue #670: Fix warnings and behavior of ExploreASL_Initialize

• Issue #465: Add projects to acknowledgments
• Issue #615: Add change log to documentation
• Issue #637: Restyle ExploreASL change log