GMOD/Apollo: 2.6.5
Creators
- Nathan Dunn1
- Colin Diesh
- Deepak2
- S2KFan
- Gregg Helt3
- Robert Buels
- Monica Munoz-Torres4
- Yating Liu
- Helena
- Anthony Bretaudeau5
- Garrett Stevens6
- Stephen Ficklin
- Justin Reese1
- luke7
- hsiao yi
- Robert Syme
- Cory Maughmer8
- NehaVC
- childers
- Michael Paulini9
- Tim Stickland10
- Mikkel Christensen11
- Aymeric Naômé
- Kim Rutherford12
- Liam Gretton
- Rasmus Olofzon13
- The Gitter Badger14
- Eric Y15
- Jun-Wei Lin
- rbelnap
- 1. Lawrence Berkeley National Lab
- 2. EMBL
- 3. Genomancer
- 4. TISLab, CU
- 5. BIPAA/GenOuest
- 6. UC Berkeley
- 7. OHSU Computational Biology Department
- 8. @TAMU-CPT
- 9. WormBase
- 10. Wellcome Sanger Institute
- 11. EBI
- 12. Uni of Cambridge / @PomBase
- 13. Lund University, Biomedical Centre
- 14. Gitter
- 15. UCB
Description
This release contains a fix that caused users to not be able to build due to a change to the Grails servers. See grails/grails-core#11825. If you are not able to upgrade Apollo to this version but still are experiencing build failures, you can update your BuildConfig.groovy
file as in this PR: 2624.
Features
- Added method to upload bulk functional annotations from JSON in the interface. 2617,2618
- Added a "topLevel" option to the "getFeatures" web services endpoint that causes the endpoint to return top-level (e.g. gene) features. 2616
Bug Fixes
- Removed deprecation from SequenceController.sequenceByName. 2619
- Fix contextual menu for blastview tracks. Thanks @abretaud. 2621
- Make Python libraries installed globally in Docker image. 2622
- Update mavenRepo to fix error grails server error during build, see grails/grails-core#11825. 2624
Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md
Docker builds are on docker hub: https://hub.docker.com/r/gmod/apollo
Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/
Note: You can find a guide to upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html
Report issues if found. Active mailing list (apollo@lbl.gov) and google group.
Files
GMOD/Apollo-2.6.5.zip
Files
(94.2 MB)
Name | Size | Download all |
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md5:b64b8a89cad53b8a8b844e9c2b820ee9
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Additional details
Related works
- Is supplement to
- https://github.com/GMOD/Apollo/tree/2.6.5 (URL)