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Published June 22, 2021 | Version 2.6.5
Software Open

GMOD/Apollo: 2.6.5

  • 1. Lawrence Berkeley National Lab
  • 2. EMBL
  • 3. Genomancer
  • 4. TISLab, CU
  • 5. BIPAA/GenOuest
  • 6. UC Berkeley
  • 7. OHSU Computational Biology Department
  • 8. @TAMU-CPT
  • 9. WormBase
  • 10. Wellcome Sanger Institute
  • 11. EBI
  • 12. Uni of Cambridge / @PomBase
  • 13. Lund University, Biomedical Centre
  • 14. Gitter
  • 15. UCB

Description

This release contains a fix that caused users to not be able to build due to a change to the Grails servers. See grails/grails-core#11825. If you are not able to upgrade Apollo to this version but still are experiencing build failures, you can update your BuildConfig.groovy file as in this PR: 2624.

Features

  • Added method to upload bulk functional annotations from JSON in the interface. 2617,2618
  • Added a "topLevel" option to the "getFeatures" web services endpoint that causes the endpoint to return top-level (e.g. gene) features. 2616

Bug Fixes

  • Removed deprecation from SequenceController.sequenceByName. 2619
  • Fix contextual menu for blastview tracks. Thanks @abretaud. 2621
  • Make Python libraries installed globally in Docker image. 2622
  • Update mavenRepo to fix error grails server error during build, see grails/grails-core#11825. 2624

Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md

Docker builds are on docker hub: https://hub.docker.com/r/gmod/apollo

Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide to upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html

Report issues if found. Active mailing list (apollo@lbl.gov) and google group.

Files

GMOD/Apollo-2.6.5.zip

Files (94.2 MB)

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