flowr: flowr 0.9.10 (dates)

2016-04-18

tl;dr (summary of changes)

• Flowr Rscript gets further enhancements, taking advantage of improved funr
• run function now accepts paths.

# 'cherries' version cd <path to pipelines> flowr x=mypipeline # 'dates' version flowr x=<path to pipelines>/mypipeline

• Previously, flowr expected a specific structure, now using ~/.flowr.conf, one may specify their own structure - enabling flexibility.

# 'cherries' version: a fixed directory structure was recommended: ~/flowr ├── conf │   ├── flowr.conf ├── pipelines │   ├── sleep_pipe.R ├── runs # 'dates' version: one may change the default paths to run, config files etc using ~/.flowr.conf # this file controls the location of these folders: flow_base_path ~/flowr # flowr home flow_conf_path {{flow_base_path}}/conf # path to configuration files, not required if using ~/.flowr.conf flow_run_path ~/flowr/runs # default home of all executed flows, you may change this flow_pipe_paths ~/flowr/pipelines,<add new paths...> # multiple paths can be specified using ","

• a few bug fixes in to_flow
• several other minor changes to messages, errors and warnings.