### Data submitted accompanying the article "Rapid divergence of genome architectures following the origin of an ectomycorrhizal symbiosis in the genus Amanita"

This repository contains the following files:

1. Annotation
	- GFF files with gene annotations for each genome
	- Flat file with functional annotation and analysis results for each of the genomes (Annotation_database.txt)
		These include gene identifiers, gene names, cluster assignment, inferred gene age, genomic context
		PFAM, IPR, GO, CAZy, TE and secretome annotations
	
2. Analysis results
	- Alignments for the phylogenomic analysis (Canopy + trimAl); Phylip format
	- Trees inferred in the phylogenomic analysis
		-- RAxML + TreeFix (.tre / .treefix.tree)
		—- Phylogenomic analysis input
			-- DLCpar locus tree (.dlcpar.locus.tree /.dlcpar_s.locus.tree[heuristic search])/ trivial trees (.tree)
			-- species tree (species_tree_named.tree)