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Data from: Climate niche differentiation between two passerines despite ongoing gene flow

Li, Shou-Hsien; Shaner, Pei-Jen L.; Tsao, Tzu-Hsuan; Lin, Rong-Chien; Liang, Wei; Yeh, Chia-Fen; Yang, Xiao-Jun; Lei, Fu-Min; Zhou, Fang; Yang, Can-Chao; Hsu, Yu-Cheng


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  <identifier identifierType="URL">https://zenodo.org/record/4970513</identifier>
  <creators>
    <creator>
      <creatorName>Li, Shou-Hsien</creatorName>
      <givenName>Shou-Hsien</givenName>
      <familyName>Li</familyName>
      <affiliation>National Taiwan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Shaner, Pei-Jen L.</creatorName>
      <givenName>Pei-Jen L.</givenName>
      <familyName>Shaner</familyName>
      <affiliation>National Taiwan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Tsao, Tzu-Hsuan</creatorName>
      <givenName>Tzu-Hsuan</givenName>
      <familyName>Tsao</familyName>
      <affiliation>National Taiwan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Lin, Rong-Chien</creatorName>
      <givenName>Rong-Chien</givenName>
      <familyName>Lin</familyName>
      <affiliation>National Taiwan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Liang, Wei</creatorName>
      <givenName>Wei</givenName>
      <familyName>Liang</familyName>
      <affiliation>Hainan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Yeh, Chia-Fen</creatorName>
      <givenName>Chia-Fen</givenName>
      <familyName>Yeh</familyName>
      <affiliation>National Taiwan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Yang, Xiao-Jun</creatorName>
      <givenName>Xiao-Jun</givenName>
      <familyName>Yang</familyName>
      <affiliation>Kunming Institute of Zoology</affiliation>
    </creator>
    <creator>
      <creatorName>Lei, Fu-Min</creatorName>
      <givenName>Fu-Min</givenName>
      <familyName>Lei</familyName>
      <affiliation>Zoological Society of London</affiliation>
    </creator>
    <creator>
      <creatorName>Zhou, Fang</creatorName>
      <givenName>Fang</givenName>
      <familyName>Zhou</familyName>
      <affiliation>Guangxi University</affiliation>
    </creator>
    <creator>
      <creatorName>Yang, Can-Chao</creatorName>
      <givenName>Can-Chao</givenName>
      <familyName>Yang</familyName>
      <affiliation>Hainan Normal University</affiliation>
    </creator>
    <creator>
      <creatorName>Hsu, Yu-Cheng</creatorName>
      <givenName>Yu-Cheng</givenName>
      <familyName>Hsu</familyName>
      <affiliation>National Dong Hwa University</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Data from: Climate niche differentiation between two passerines despite ongoing gene flow</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2015</publicationYear>
  <subjects>
    <subject>gene flow</subject>
    <subject>Paradoxornis alphonsianus</subject>
    <subject>niche conservatism</subject>
    <subject>Paradoxornis webbianus</subject>
    <subject>Parapatry</subject>
    <subject>Holocene</subject>
    <subject>niche evolution</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2015-11-20</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4970513</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="Cites">10.1111/1365-2656.12331</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsIdenticalTo">10.5061/dryad.rs434</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/dryad</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/publicdomain/zero/1.0/legalcode">Creative Commons Zero v1.0 Universal</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">Niche evolution underpins the generation and maintenance of biological diversity, but niche conservatism, in which niches remain little changed over time in closely related taxa and the role of ecology in niche evolution are continually debated. To test whether climate niches are conserved in two closely related passerines in East Asia – the vinous-throated (Paradoxornis webbianus) and ashy-throated (P. alphonsianus) parrotbills – we established their potential allopatric and sympatric regions using ecological niche models and compared differences in their climate niches using niche overlap indices in background tests and multivariate statistical analyses. We also used polymorphism data on 44 nuclear genes to infer their divergence demography. We found that these two parrotbills occupy different climate niches, in both their allopatric and potential sympatric regions. Because the potential sympatric region is the area predicted to be suitable for both parrotbills based on the ecological niche models, it can serve as a natural common garden. Therefore, their observed niche differences in this potential sympatry were not simply rendered by phenotypic plasticity, and probably had a genetic basis. Our genetic analyses revealed that the two parrotbills are not evolutionarily independent for the most recent part of their divergence history. The two parrotbills diverged c. 856,000 years ago, and have had substantial gene flow since a presumed secondary contact c. 290,000 years ago. This study provides an empirical case demonstrating that climate niches may not be homogenized in nascent species in spite of substantial, ongoing gene flow, which in turn suggests a role for ecology in promoting and maintaining diversification among incipient species.</description>
    <description descriptionType="Other">&lt;div class="o-metadata__file-usage-entry"&gt;dryad_paradoxornis_presence_data_shaner20141110&lt;div class="o-metadata__file-description"&gt;This data contains a total of 816 bird occurrence points, including 677 occurrence data points for Paradoxornis webbianus suffusus and 139 for P. alphonsianus, initially obtained from museum archives (Institute of Zoology, Chines Academy of Sciences; Kunming Institute of Zoology, Chinese Academy of Science; Sichuan Agriculture University), bird watching records (http://birdtalker.net/), literature and personal observations. The P. alphonsianus occurrences included two subspecies (P. a. alphonsianus with 110 occurrences and P. a. yunnenesis with 29 occurrences).&lt;/div&gt;&lt;div class="o-metadata__file-name"&gt;&lt;/div&gt;&lt;/div&gt;</description>
  </descriptions>
  <geoLocations>
    <geoLocation>
      <geoLocationPlace>East Asia</geoLocationPlace>
    </geoLocation>
  </geoLocations>
</resource>
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