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{"_key":"60c20a7b7723bebd86645346","_id":"references/60c20a7b7723bebd86645346","_rev":"_cfFkzFG---","tei":"\n\t\n\t\tTaxIt: An Iterative Computational Pipeline for Untargeted Strain-Level Identification Using MS/MS Spectra from Pathogenic Single-Organism Samples\n\t\t\n\t\t\tMKuhring\n\t\t\n\t\t10.1021/acs.jproteome.9b00714\n\t\n\t\n\t\tJ. Proteome Res\n\t\t\n\t\t\t19\n\t\t\t6\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20a7b7723bebd86645345"},"refKey":28},
{"_key":"60c20a7b7723bebd86645347","_id":"references/60c20a7b7723bebd86645347","_rev":"_cfFkzFS---","tei":"\n\t\n\t\tSkyline: an open source document editor for creating and analyzing targeted proteomics experiments\n\t\t\n\t\t\tBrendanMaclean\n\t\t\n\t\t\n\t\t\tDanielaMTomazela\n\t\t\n\t\t\n\t\t\tNicholasShulman\n\t\t\n\t\t\n\t\t\tMatthewChambers\n\t\t\n\t\t\n\t\t\tGregoryLFinney\n\t\t\n\t\t\n\t\t\tBarbaraFrewen\n\t\t\n\t\t\n\t\t\tRandallKern\n\t\t\n\t\t\n\t\t\tDavidLTabb\n\t\t\n\t\t\n\t\t\tDanielCLiebler\n\t\t\n\t\t\n\t\t\tMichaelJMaccoss\n\t\t\n\t\t10.1093/bioinformatics/btq054\n\t\t20147306\n\t\tPMC2844992\n\t\tark:/67375/HXZ-TW4HTQ9Q-9\n\t\tC817443FF3E643C0B243A311BDCE7D7F4B792E3A\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t26\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20a7b7723bebd86645345"},"refKey":29},
{"_key":"60c20a827723bebd86645356","_id":"references/60c20a827723bebd86645356","_rev":"_cfFkzFe---","tei":"\n\t\n\t\tPySAT: A Python Toolkit for Prototyping with SAT Oracles\n\t\t\n\t\t\tAlexeyIgnatiev\n\t\t\n\t\t\n\t\t\tAntonioMorgado\n\t\t\n\t\t\n\t\t\tJoaoMarques-Silva\n\t\t\n\t\t10.1007/978-3-319-94144-8_26\n\t\t\n\t\n\t\n\t\tTheory and Applications of Satisfiability Testing – SAT 2018\n\t\t\t\t\n\t\t\tOBeyersdorff\n\t\t\tCMWintersteiger\n\t\t\n\t\tCham\n\t\t\n\t\t\tSpringer International Publishing\n\t\t\t\n\t\t\t10929\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20a827723bebd86645355"},"refKey":9},
{"_key":"60c20ad27723bebd8664538f","_id":"references/60c20ad27723bebd8664538f","_rev":"_cfFkzFq---","tei":"\n\t\n\t\tPackage 'Partiallyoverlapping': Partially Overlapping Samples Tests\n\t\t\n\t\t\tBDerrick\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\t2.0 ed.\n\n","document":{"$oid":"60c20ad27723bebd8664538e"},"refKey":41},
{"_key":"60c20ae57723bebd8664539f","_id":"references/60c20ae57723bebd8664539f","_rev":"_cfFkzF2---","tei":"\n\t\n\t\tABGD, Automatic Barcode Gap Discovery for primary species delimitation\n\t\t\n\t\t\tNPuillandre\n\t\t\n\t\t\n\t\t\tALambert\n\t\t\n\t\t\n\t\t\tSBrouillet\n\t\t\n\t\t\n\t\t\tGAchaz\n\t\t\n\t\t10.1111/j.1365-294x.2011.05239.x\n\t\t21883587\n\t\tark:/67375/WNG-93L5RXJL-G\n\t\t80057509CD1C762CDAF3EFD2A95F254CCA60939D\n\t\t\n\t\n\t\n\t\tMolecular Ecology\n\t\t0962-1083\n\t\t\n\t\t\t21\n\t\t\t8\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":62},
{"_key":"60c20ae57723bebd866453a0","_id":"references/60c20ae57723bebd866453a0","_rev":"_cfFkzGC---","tei":"\n\t\n\t\tBayesian phylogenetics with BEAUti and the BEAST 1.7\n\t\t\n\t\t\tARambaut\n\t\t\n\t\t\n\t\t\tMASuchard\n\t\t\n\t\t\n\t\t\tDXie\n\t\t\n\t\t\n\t\t\tAJDrummond\n\t\t\n\t\t\n\t\t\tAJDrummond\n\t\t\n\t\t\n\t\t\tMASuchard\n\t\t\n\t\t\n\t\t\tDXie\n\t\t\n\t\t\n\t\t\tARambaut\n\t\t\n\t\t10.1093/molbev/mss075\n\t\t22367748\n\t\t\n\t\n\t\n\t\tMol Biol Evol\n\t\t\n\t\t\t54\n\t\t\t\n\t\t\t\n\t\t\n\t\n\tPLOS ONE\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":52},
{"_key":"60c20ae57723bebd866453a1","_id":"references/60c20ae57723bebd866453a1","_rev":"_cfFkzGO---","tei":"\n\t\n\t\tMAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability\n\t\t\n\t\t\tKKatoh\n\t\t\n\t\t\n\t\t\tDMStandley\n\t\t\n\t\t10.1093/molbev/mst010\n\t\t23329690\n\t\tPMC3603318\n\t\t\n\t\t\n\t\n\t\n\t\tMolecular Biology and Evolution\n\t\tMolecular Biology and Evolution\n\t\t0737-4038\n\t\t1537-1719\n\t\t\n\t\t\t30\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":44},
{"_key":"60c20ae57723bebd866453a2","_id":"references/60c20ae57723bebd866453a2","_rev":"_cfFkzGa---","tei":"\n\t\n\t\t\n\t\t\n\t\t\tARambaut\n\t\t\n\t\t\n\t\t\tAJDrummond\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\tLogCombiner v1. 8.2.\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":51},
{"_key":"60c20ae57723bebd866453a3","_id":"references/60c20ae57723bebd866453a3","_rev":"_cfFkzGm---","tei":"\n\t\n\t\tjModelTest 2: more models, new heuristics and parallel computing\n\t\t\n\t\t\tDDarriba\n\t\t\n\t\t\n\t\t\tGLTaboada\n\t\t\n\t\t\n\t\t\tRDoallo\n\t\t\n\t\t\n\t\t\tDPosada\n\t\t\n\t\n\t\n\t\tNat Methods\n\t\t\n\t\t\t9\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":48},
{"_key":"60c20ae57723bebd866453a4","_id":"references/60c20ae57723bebd866453a4","_rev":"_cfFkzGy---","tei":"\n\t\n\t\tMEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets\n\t\t\n\t\t\tSudhirKumar\n\t\t\n\t\t\n\t\t\tGlenStecher\n\t\t\n\t\t\n\t\t\tKoichiroTamura\n\t\t\n\t\t10.1093/molbev/msw054\n\t\t27004904\n\t\t\n\t\t\n\t\n\t\n\t\tMolecular Biology and Evolution\n\t\tMol Biol Evol\n\t\t0737-4038\n\t\t1537-1719\n\t\t\n\t\t\t33\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":54},
{"_key":"60c20ae57723bebd866453a5","_id":"references/60c20ae57723bebd866453a5","_rev":"_cfFkzH----","tei":"\n\t\n\t\tiNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)\n\t\t\n\t\t\tTCHsieh\n\t\t\n\t\t\n\t\t\tKHMa\n\t\t\n\t\t\n\t\t\tAnneChao\n\t\t\n\t\t10.1111/2041-210x.12613\n\t\t\n\t\n\t\n\t\tMethods in Ecology and Evolution\n\t\tMethods Ecol Evol\n\t\t2041-210X\n\t\t\n\t\t\t7\n\t\t\t12\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\tMethods in Ecology and Evolution\n\n","document":{"$oid":"60c20ae57723bebd8664539e"},"refKey":65},
{"_key":"60c20b287723bebd866453e1","_id":"references/60c20b287723bebd866453e1","_rev":"_cfFkzHK---","tei":"\n\t\n\t\tTANDEM: matching proteins with tandem mass spectra\n\t\t\n\t\t\tRCraig\n\t\t\n\t\t\n\t\t\tRCBeavis\n\t\t\n\t\t10.1093/bioinformatics/bth092\n\t\t14976030\n\t\tark:/67375/HXZ-Q6QW2SFN-P\n\t\t3F31815812C554F44556E5B8433D2BE05C949105\n\t\t\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t20\n\t\t\t9\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20b287723bebd866453e0"},"refKey":35},
{"_key":"60c20b287723bebd866453e2","_id":"references/60c20b287723bebd866453e2","_rev":"_cfFkzHW---","tei":"\n\t\n\t\tSearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines\n\t\t\n\t\t\tHaraldBarsnes\n\t\t\n\t\t\n\t\t\tMarcVaudel\n\t\t\t0000-0003-1179-9578\n\t\t\n\t\t10.1021/acs.jproteome.8b00175\n\t\t29774740\n\t\t\n\t\n\t\n\t\tJournal of Proteome Research\n\t\tJ. Proteome Res.\n\t\t1535-3893\n\t\t1535-3907\n\t\t\n\t\t\t17\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tAmerican Chemical Society (ACS)\n\t\t\n\t\n\n","document":{"$oid":"60c20b287723bebd866453e0"},"refKey":31},
{"_key":"60c20b287723bebd866453e3","_id":"references/60c20b287723bebd866453e3","_rev":"_cfFkzHi---","tei":"\n\t\n\t\tMS-GF+ makes progress towards a universal database search tool for proteomics\n\t\t\n\t\t\tSangtaeKim\n\t\t\n\t\t\n\t\t\tPavelAPevzner\n\t\t\n\t\t10.1038/ncomms6277\n\t\t25358478\n\t\tPMC5036525\n\t\t\n\t\t\n\t\n\t\n\t\tNature Communications\n\t\tNat Commun\n\t\t2041-1723\n\t\t\n\t\t\t5\n\t\t\t1\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c20b287723bebd866453e0"},"refKey":36},
{"_key":"60c20b287723bebd866453e4","_id":"references/60c20b287723bebd866453e4","_rev":"_cfFkzHq---","tei":"\n\t\n\t\tOpen Mass Spectrometry Search Algorithm\n\t\t\n\t\t\tLewisYGeer\n\t\t\n\t\t\n\t\t\tSanfordPMarkey\n\t\t\n\t\t\n\t\t\tJeffreyAKowalak\n\t\t\n\t\t\n\t\t\tLukasWagner\n\t\t\n\t\t\n\t\t\tMingXu\n\t\t\n\t\t\n\t\t\tDawnMMaynard\n\t\t\n\t\t\n\t\t\tXiaoyuYang\n\t\t\n\t\t\n\t\t\tWenyaoShi\n\t\t\n\t\t\n\t\t\tStephenHBryant\n\t\t\n\t\t10.1021/pr0499491\n\t\t15473683\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Proteome Research\n\t\tJ. Proteome Res.\n\t\t1535-3893\n\t\t1535-3907\n\t\t\n\t\t\t3\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tAmerican Chemical Society (ACS)\n\t\t\n\t\n\n","document":{"$oid":"60c20b287723bebd866453e0"},"refKey":34},
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{"_key":"60c20b287723bebd866453e6","_id":"references/60c20b287723bebd866453e6","_rev":"_cfFkzIC---","tei":"\n\t\n\t\tIntegrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration\n\t\t\n\t\t\tHThorvaldsdottir\n\t\t\n\t\t\n\t\t\tJTRobinson\n\t\t\n\t\t\n\t\t\tJPMesirov\n\t\t\n\t\t10.1093/bib/bbs017\n\t\t22517427\n\t\tPMC3603213\n\t\t\n\t\t\n\t\n\t\n\t\tBriefings in Bioinformatics\n\t\tBriefings in Bioinformatics\n\t\t1467-5463\n\t\t1477-4054\n\t\t\n\t\t\t14\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20b287723bebd866453e0"},"refKey":56},
{"_key":"60c20b3f7723bebd8664541e","_id":"references/60c20b3f7723bebd8664541e","_rev":"_cfFkzIO---","tei":"\n\t\n\t\tAutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading\n\t\t\n\t\t\tOTrott\n\t\t\n\t\t\n\t\t\tAJOlson\n\t\t\n\t\n\t\n\t\tJ. Comput. Chem\n\t\t\n\t\t\t31\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20b3f7723bebd8664541d"},"refKey":42},
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{"_key":"60c20b467723bebd8664542b","_id":"references/60c20b467723bebd8664542b","_rev":"_cfFkzIm---","tei":"\n\t\n\t\tMining in Anticipation for Concept Change: Proactive-Reactive Prediction in Data Streams\n\t\t\n\t\t\tYingYang\n\t\t\n\t\t\n\t\t\tXindongWu\n\t\t\n\t\t\n\t\t\tXingquanZhu\n\t\t\n\t\t10.1007/s10618-006-0050-x\n\t\tark:/67375/VQC-PNWTZXFB-B\n\t\tBE4A3AFFA7732EE24D7CEA9FF71C643274D636F7\n\t\n\t\n\t\tData Mining and Knowledge Discovery\n\t\tData Min Knowl Disc\n\t\t1384-5810\n\t\t1573-756X\n\t\t\n\t\t\t13\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tSpringer Science and Business Media LLC\n\t\t\n\t\n\n","document":{"$oid":"60c20b467723bebd8664542a"},"refKey":13},
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{"_key":"60c20cfb7723bebd866455ec","_id":"references/60c20cfb7723bebd866455ec","_rev":"_cfFkzPG---","tei":"\n\t\n\t\tParallel and distributed architecture of genetic algorithm on apache Hadoop and spark\n\t\t\n\t\t\tHCLu\n\t\t\n\t\t\n\t\t\tFJHwang\n\t\t\n\t\t\n\t\t\tYHHuang\n\t\t\n\t\t10.1016/j.asoc.2020.106497\n\t\t\n\t\n\t\n\t\tAppl Soft Comput\n\t\t\n\t\t\t95\n\t\t\t106497\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20cfb7723bebd866455ea"},"refKey":21},
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{"_key":"60c20e5e7723bebd86645849","_id":"references/60c20e5e7723bebd86645849","_rev":"_cfFkzTe---","tei":"\n\t\n\t\tSWISS-MODEL: Homology modelling of protein structures and complexes\n\t\t\n\t\t\tAWaterhouse\n\t\t\n\t\t\n\t\t\tMBertoni\n\t\t\n\t\t\n\t\t\tSBienert\n\t\t\n\t\t\n\t\t\tGStuder\n\t\t\n\t\t\n\t\t\tGTauriello\n\t\t\n\t\t\n\t\t\tRGumienny\n\t\t\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t46\n\t\t\tW1\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20e5e7723bebd86645848"},"refKey":10},
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{"_key":"60c20e757723bebd86645869","_id":"references/60c20e757723bebd86645869","_rev":"_cfFkzT2---","tei":"\n\t\n\t\tPrimer-BLAST: A tool to design target-specific primers for polymerase chain reaction\n\t\t\n\t\t\tJianYe\n\t\t\n\t\t\n\t\t\tGeorgeCoulouris\n\t\t\n\t\t\n\t\t\tIrenaZaretskaya\n\t\t\n\t\t\n\t\t\tIoanaCutcutache\n\t\t\n\t\t\n\t\t\tSteveRozen\n\t\t\n\t\t\n\t\t\tThomasLMadden\n\t\t\n\t\t10.1186/1471-2105-13-134\n\t\t22708584\n\t\tPMC3412702\n\t\t\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\tBMC Bioinformatics\n\t\t1471-2105\n\t\t\n\t\t\t13\n\t\t\t1\n\t\t\t134\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c20e757723bebd86645868"},"refKey":92},
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{"_key":"60c20e757723bebd8664586b","_id":"references/60c20e757723bebd8664586b","_rev":"_cfFkzUO---","tei":"\n\t\n\t\tTrimmomatic: a flexible trimmer for Illumina sequence data\n\t\t\n\t\t\tAnthonyMBolger\n\t\t\n\t\t\n\t\t\tMarcLohse\n\t\t\n\t\t\n\t\t\tBjoernUsadel\n\t\t\n\t\t10.1093/bioinformatics/btu170\n\t\t24695404\n\t\tPMC4103590\n\t\t\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t30\n\t\t\t15\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20e757723bebd86645868"},"refKey":75},
{"_key":"60c20e757723bebd8664586c","_id":"references/60c20e757723bebd8664586c","_rev":"_cfFkzUW---","tei":"\n\t\n\t\tKEGG as a reference resource for gene and protein annotation\n\t\t\n\t\t\tMinoruKanehisa\n\t\t\n\t\t\n\t\t\tYokoSato\n\t\t\n\t\t\n\t\t\tMasayukiKawashima\n\t\t\n\t\t\n\t\t\tMihoFurumichi\n\t\t\n\t\t\n\t\t\tMaoTanabe\n\t\t\n\t\t10.1093/nar/gkv1070\n\t\t26476454\n\t\tPMC4702792\n\t\t\n\t\t\n\t\n\t\n\t\tNucleic Acids Research\n\t\tNucleic Acids Res\n\t\t0305-1048\n\t\t1362-4962\n\t\t\n\t\t\t44\n\t\t\tD1\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20e757723bebd86645868"},"refKey":84},
{"_key":"60c20e757723bebd8664588a","_id":"references/60c20e757723bebd8664588a","_rev":"_cfFkzUi---","tei":"\n\t\n\t\tSingapore built a coronaviris app but it hasnt worked so far\n\t\t\n\t\n\t\n\t\tApp Covid-19 Contact Tracing\n\t\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20e757723bebd86645889"},"refKey":2},
{"_key":"60c20e8c7723bebd8664589b","_id":"references/60c20e8c7723bebd8664589b","_rev":"_cfFkzUu---","tei":"\n\t\n\t\tA project written in Python to get old tweets which could bypass some limitations of Twitter official API\n\t\t\n\t\t\tJHenrique\n\t\t\n\t\t\n\t\t\n\t\n\taccessed 2020-10-21\n\n","document":{"$oid":"60c20e8c7723bebd8664589a"},"refKey":12},
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{"_key":"60c20edc7723bebd866458ce","_id":"references/60c20edc7723bebd866458ce","_rev":"_cfFkzVO---","tei":"\n\t\n\t\tUCSF Chimera?A visualization system for exploratory research and analysis\n\t\t\n\t\t\tEricFPettersen\n\t\t\n\t\t\n\t\t\tThomasDGoddard\n\t\t\n\t\t\n\t\t\tConradCHuang\n\t\t\n\t\t\n\t\t\tGregorySCouch\n\t\t\n\t\t\n\t\t\tDanielMGreenblatt\n\t\t\n\t\t\n\t\t\tElaineCMeng\n\t\t\n\t\t\n\t\t\tThomasEFerrin\n\t\t\n\t\t10.1002/jcc.20084\n\t\t15264254\n\t\tark:/67375/WNG-CPNGNQ2F-M\n\t\t7F5E235169445BEA0F69F7B51E9520DB4ED272F3\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Computational Chemistry\n\t\tJ. Comput. Chem.\n\t\t0192-8651\n\t\t1096-987X\n\t\t\n\t\t\t25\n\t\t\t13\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c20edc7723bebd866458cb"},"refKey":41},
{"_key":"60c20edc7723bebd866458cf","_id":"references/60c20edc7723bebd866458cf","_rev":"_cfFkzVa---","tei":"\n\t\n\t\tExtra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein−Ligand Complexes\n\t\t\n\t\t\tRichardAFriesner\n\t\t\n\t\t\n\t\t\tRobertBMurphy\n\t\t\n\t\t\n\t\t\tMatthewPRepasky\n\t\t\n\t\t\n\t\t\tLeahLFrye\n\t\t\n\t\t\n\t\t\tJeremyRGreenwood\n\t\t\n\t\t\n\t\t\tThomasAHalgren\n\t\t\n\t\t\n\t\t\tPaulCSanschagrin\n\t\t\n\t\t\n\t\t\tDanielTMainz\n\t\t\n\t\t10.1021/jm051256o\n\t\t17034125\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Medicinal Chemistry\n\t\tJ. Med. Chem.\n\t\t0022-2623\n\t\t1520-4804\n\t\t\n\t\t\t49\n\t\t\t21\n\t\t\t\n\t\t\t\n\t\t\tAmerican Chemical Society (ACS)\n\t\t\n\t\n\n","document":{"$oid":"60c20edc7723bebd866458cb"},"refKey":43},
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{"_key":"60c20ee27723bebd866458e0","_id":"references/60c20ee27723bebd866458e0","_rev":"_cfFkzWK---","tei":"\n\t\n\t\tORA User's Guide 2011\n\t\t\n\t\t\tKathleenMCarley\n\t\t\n\t\t\n\t\t\tJeffReminga\n\t\t\n\t\t\n\t\t\tJonStorrick\n\t\t\n\t\t\n\t\t\tDaveColumbus\n\t\t\n\t\t10.21236/ada550789\n\t\tCMU-ISRI-07-115\n\t\t\n\t\t\n\t\t\t\n\t\t\tDefense Technical Information Center\n\t\t\n\t\t\n\t\t\tCarnegie Mellon University, School of Computer Science, Institute for Software Research\n\t\t\n\t\n\tTechnical Report\n\n","document":{"$oid":"60c20ee27723bebd866458dd"},"refKey":20},
{"_key":"60c20ee27723bebd866458e1","_id":"references/60c20ee27723bebd866458e1","_rev":"_cfFkzWS---","tei":"\n\t\n\t\tAnalysis and visualization of network data using JUNG\n\t\t\n\t\t\tJO'madadhain\n\t\t\n\t\t\n\t\t\tDFisher\n\t\t\n\t\t\n\t\t\tPSmyth\n\t\t\n\t\t\n\t\t\tSWhite\n\t\t\n\t\t\n\t\t\tY.-BBoey\n\t\t\n\t\n\t\n\t\tJournal of Statistical Software\n\t\t\n\t\t\t\n\t\t\t\n\t\t\tVV\n\t\t\n\t\n\tII\n\n","document":{"$oid":"60c20ee27723bebd866458dd"},"refKey":60},
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{"_key":"60c20ee27723bebd866458e5","_id":"references/60c20ee27723bebd866458e5","_rev":"_cfFkzX----","tei":"\n\t\n\t\tA Network-based Simulation Architecture for Studying Epidemic Dynamics\n\t\t\n\t\t\tChung-YuanHuang\n\t\t\n\t\t\n\t\t\tYu-ShiuanTsai\n\t\t\n\t\t\n\t\t\tTzai-HungWen\n\t\t\n\t\t10.1177/0037549709340733\n\t\tdoi=10.1177/ 0037549709340733\n\t\t\n\t\n\t\n\t\tSIMULATION\n\t\tSIMULATION\n\t\t0037-5497\n\t\t1741-3133\n\t\t\n\t\t\t86\n\t\t\t5-6\n\t\t\t\n\t\t\t\n\t\t\tSAGE Publications\n\t\t\n\t\n\n","document":{"$oid":"60c20ee27723bebd866458dd"},"refKey":42},
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{"_key":"60c20f417723bebd8664596d","_id":"references/60c20f417723bebd8664596d","_rev":"_cfFkzYm---","tei":"\n\t\n\t\tClosing the gap between methodologists and end-users: R as a computational back-end\n\t\t\n\t\t\tBCWallace\n\t\t\n\t\t\n\t\t\tIJDahabreh\n\t\t\n\t\t\n\t\t\tTATrikalinos\n\t\t\n\t\t\n\t\t\tJLau\n\t\t\n\t\t\n\t\t\tPTrow\n\t\t\n\t\t\n\t\t\tCHSchmid\n\t\t\n\t\n\t\n\t\tJ Stat Softw\n\t\t\n\t\t\t49\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c20f417723bebd8664596c"},"refKey":23},
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{"_key":"60c20fac7723bebd866459da","_id":"references/60c20fac7723bebd866459da","_rev":"_cfFkzZe---","tei":"\n\t\n\t\tSOAP2: an improved ultrafast tool for short read alignment\n\t\t\n\t\t\tRLi\n\t\t\n\t\t\n\t\t\tCYu\n\t\t\n\t\t\n\t\t\tYLi\n\t\t\n\t\t\n\t\t\tT-WLam\n\t\t\n\t\t\n\t\t\tS-MYiu\n\t\t\n\t\t\n\t\t\tKKristiansen\n\t\t\n\t\t\n\t\t\tJWang\n\t\t\n\t\t10.1093/bioinformatics/btp336\n\t\t19497933\n\t\tark:/67375/HXZ-ZRGFTL32-H\n\t\t533F25C433DDF563D9D448BC06436A274691B803\n\t\t\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t25\n\t\t\t15\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c20fac7723bebd866459d8"},"refKey":6},
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{"_key":"60c210097723bebd86645a14","_id":"references/60c210097723bebd86645a14","_rev":"_cfFkzbC---","tei":"\n\t\n\t\tA numerical Bayesian-calibrated characterization method for multiscale prepreg preforming simulations with tension-shear coupling\n\t\t\n\t\t\tWeizhaoZhang\n\t\t\n\t\t\n\t\t\tRaminBostanabad\n\t\t\t0000-0001-7785-4117\n\t\t\n\t\t\n\t\t\tBiaoLiang\n\t\t\n\t\t\n\t\t\tXumingSu\n\t\t\n\t\t\n\t\t\tDanielleZeng\n\t\t\n\t\t\n\t\t\tMiguelABessa\n\t\t\t0000-0002-6216-0355\n\t\t\n\t\t\n\t\t\tYanchaoWang\n\t\t\n\t\t\n\t\t\tWeiChen\n\t\t\n\t\t\n\t\t\tJianCao\n\t\t\n\t\t10.1016/j.compscitech.2018.11.019\n\t\n\t\n\t\tComposites Science and Technology\n\t\tComposites Science and Technology\n\t\t0266-3538\n\t\t\n\t\t\t170\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c210097723bebd86645a13"},"refKey":29},
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{"_key":"60c2104a7723bebd86645a54","_id":"references/60c2104a7723bebd86645a54","_rev":"_cfFkzba---","tei":"\n\t\n\t\tThe PyMol molecular graphics system\n\t\t\n\t\t\tWLDelano\n\t\t\n\t\n\t\n\t\tProteins Struct. Funct. Bioinform\n\t\t\n\t\t\t30\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2104a7723bebd86645a53"},"refKey":3},
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{"_key":"60c2107c7723bebd86645a95","_id":"references/60c2107c7723bebd86645a95","_rev":"_cfFkzcG---","tei":"\n\t\n\t\tMEGA7: molecular evolutionary Genetics analysis version 7.0 for bigger datasets\n\t\t\n\t\t\tSKumar\n\t\t\n\t\t\n\t\t\tGStecher\n\t\t\n\t\t\n\t\t\tKTamura\n\t\t\n\t\n\t\n\t\tMol. Biol. Evol\n\t\t\n\t\t\t33\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2107c7723bebd86645a94"},"refKey":16},
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{"_key":"60c2107d7723bebd86645a9c","_id":"references/60c2107d7723bebd86645a9c","_rev":"_cfFkzce---","tei":"\n\t\n\t\tAccurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads\n\t\t\n\t\t\tLiCXia\n\t\t\n\t\t\n\t\t\tJacobACram\n\t\t\n\t\t\n\t\t\tTingChen\n\t\t\n\t\t\n\t\t\tJedAFuhrman\n\t\t\n\t\t\n\t\t\tFengzhuSun\n\t\t\n\t\t10.1371/journal.pone.0027992\n\t\t22162995\n\t\tPMC3232206\n\t\t\n\t\n\t\n\t\tPLoS ONE\n\t\tPLoS ONE\n\t\t1932-6203\n\t\t\n\t\t\t6\n\t\t\t12\n\t\t\te27992\n\t\t\t\n\t\t\tPublic Library of Science (PLoS)\n\t\t\n\t\n\n","document":{"$oid":"60c2107d7723bebd86645a9a"},"refKey":28},
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{"_key":"60c2110d7723bebd86645b9b","_id":"references/60c2110d7723bebd86645b9b","_rev":"_cfFkze6---","tei":"\n\t\n\t\tA knowledge base for predicting protein localization sites in eukaryotic cells\n\t\t\n\t\t\tKentaNakai\n\t\t\n\t\t\n\t\t\tMinoruKanehisa\n\t\t\n\t\t10.1016/s0888-7543(05)80111-9\n\t\t1478671\n\t\tS0888-7543(05)80111-9\n\t\tark:/67375/6H6-BF2TW6P8-C\n\t\tFC63FDDDCC5116A584674779F5CBE366E4721E84\n\t\n\t\n\t\tGenomics\n\t\tGenomics\n\t\t0888-7543\n\t\t\n\t\t\t14\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c2110d7723bebd86645b9a"},"refKey":33},
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{"_key":"60c213407723bebd86645dc3","_id":"references/60c213407723bebd86645dc3","_rev":"_cfFkznK---","tei":"\n\t\n\t\tinsight: Easy Access to Model Information for Various Model Objects\n\t\t\n\t\t\tDLüdecke\n\t\t\n\t\t\n\t\t\tDMakowski\n\t\t\n\t\t\n\t\t\tIPatil\n\t\t\n\t\t\n\t\t\tPWaggoner\n\t\t\n\t\t\n\t\t\t2020\n\t\t\n\t\n\tInternet. cited 2020 Sep 7\n\n","document":{"$oid":"60c213407723bebd86645dc0"},"refKey":27},
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{"_key":"60c214807723bebd86645fb1","_id":"references/60c214807723bebd86645fb1","_rev":"_cfFkzpy---","tei":"\n\t\n\t\tImproved method for predicting linear B-cell epitopes\n\t\t\n\t\t\tJepLarsen\n\t\t\n\t\t\n\t\t\tOLund\n\t\t\n\t\t\n\t\t\tMNielsen\n\t\t\n\t\t10.1186/1745-7580-2-2\n\t\n\t\n\t\tImmunome Research\n\t\t\n\t\t\t2\n\t\t\t1\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c214807723bebd86645faf"},"refKey":37},
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{"_key":"60c214807723bebd86645fb4","_id":"references/60c214807723bebd86645fb4","_rev":"_cfFkzqW---","tei":"\n\t\n\t\tDevelopment and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids\n\t\t\n\t\t\tWLJorgensen\n\t\t\n\t\t\n\t\t\tDSMaxwell\n\t\t\n\t\t\n\t\t\tJTirado-Rives\n\t\t\n\t\n\t\n\t\tJournal of the American Chemical Society\n\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c214807723bebd86645faf"},"refKey":29},
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{"_key":"60c214c67723bebd86646024","_id":"references/60c214c67723bebd86646024","_rev":"_cfFkzqq---","tei":"\n\t\n\t\tCoordinate-based activation likelihood estimation meta-analysis of neuroimaging data: A random-effects approach based on empirical estimates of spatial uncertainty\n\t\t\n\t\t\tSimonBEickhoff\n\t\t\n\t\t\n\t\t\tAngelaRLaird\n\t\t\n\t\t\n\t\t\tChristianGrefkes\n\t\t\n\t\t\n\t\t\tLingEWang\n\t\t\n\t\t\n\t\t\tKarlZilles\n\t\t\n\t\t\n\t\t\tPeterTFox\n\t\t\n\t\t10.1002/hbm.20718\n\t\t19172646\n\t\tPMC2872071\n\t\tark:/67375/WNG-R5V21TTD-F\n\t\t17BE230EE65D397C194C7EB7F1A1DAF9956FF63E\n\t\t\n\t\n\t\n\t\tHuman Brain Mapping\n\t\tHum. Brain Mapp.\n\t\t1065-9471\n\t\t1097-0193\n\t\t\n\t\t\t30\n\t\t\t9\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c214c67723bebd86646023"},"refKey":23},
{"_key":"60c214cf7723bebd8664602c","_id":"references/60c214cf7723bebd8664602c","_rev":"_cfFkzq2---","tei":"\n\t\n\t\tMatplotlib: A 2D Graphics Environment\n\t\t\n\t\t\tJohnDHunter\n\t\t\n\t\t\n\t\t\tMatplotlib\n\t\t\n\t\t10.1109/mcse.2007.55\n\t\t\n\t\n\t\n\t\tComputing in Science & Engineering\n\t\tComput. Sci. Eng.\n\t\t1521-9615\n\t\t\n\t\t\t9\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tInstitute of Electrical and Electronics Engineers (IEEE)\n\t\t\n\t\n\n","document":{"$oid":"60c214cf7723bebd8664602b"},"refKey":37},
{"_key":"60c214cf7723bebd8664602d","_id":"references/60c214cf7723bebd8664602d","_rev":"_cfFkzrC---","tei":"\n\t\n\t\tScanpy for analysis of large-scale single-cell gene expression data\n\t\t\n\t\t\tFAlexanderWolf\n\t\t\t0000-0002-8760-7838\n\t\t\n\t\t\n\t\t\tPhilippAngerer\n\t\t\n\t\t\n\t\t\tFabianJTheis\n\t\t\n\t\t10.1101/174029\n\t\t\n\t\t\n\t\t\t\n\t\t\tCold Spring Harbor Laboratory\n\t\t\n\t\n\n","document":{"$oid":"60c214cf7723bebd8664602b"},"refKey":57},
{"_key":"60c214cf7723bebd8664602e","_id":"references/60c214cf7723bebd8664602e","_rev":"_cfFkzrO---","tei":"\n\t\n\t\tSciPy 1.0: fundamental algorithms for scientific computing in Python\n\t\t\n\t\t\tPVirtanen\n\t\t\n\t\t\n\t\t\tRGommers\n\t\t\n\t\t\n\t\t\tTEOliphant\n\t\t\n\t\t\n\t\t\tMHaberland\n\t\t\n\t\t\n\t\t\tTReddy\n\t\t\n\t\t\n\t\t\tDCournapeau\n\t\t\n\t\t10.1038/s41592-019-0686-2\n\t\t32015543\n\t\tPMC7056644\n\t\t\n\t\n\t\n\t\tNat Methods\n\t\t\n\t\t\t17\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c214cf7723bebd8664602b"},"refKey":40},
{"_key":"60c214cf7723bebd8664602f","_id":"references/60c214cf7723bebd8664602f","_rev":"_cfFkzrW---","tei":"\n\t\n\t\tPooling across cells to normalize single-cell RNA sequencing data with many zero counts\n\t\t\n\t\t\tATLun\n\t\t\n\t\t\n\t\t\tKBach\n\t\t\n\t\t\n\t\t\tJCMarioni\n\t\t\n\t\t10.1186/s13059-016-0947-7\n\t\t27122128\n\t\tPMC4848819\n\t\t\n\t\n\t\n\t\tGenome Biol\n\t\t\n\t\t\t17\n\t\t\t75\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c214cf7723bebd8664602b"},"refKey":59},
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{"_key":"60c214ed7723bebd8664605c","_id":"references/60c214ed7723bebd8664605c","_rev":"_cfFkzru---","tei":"\n\t\n\t\tBioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT\n\t\t\n\t\t\tTAHall\n\t\t\n\t\n\t\n\t\tNucleic Acids Symp Ser\n\t\t\n\t\t\t41\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c214ed7723bebd8664605b"},"refKey":4},
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{"_key":"60c215127723bebd86646071","_id":"references/60c215127723bebd86646071","_rev":"_cfFkzsC---","tei":"\n\t\n\t\tR: a language and environment for statistical computing\n\t\t\n\t\t\tDevelopment Core\n\t\t\n\t\t\n\t\t\t\n\t\t\tVienna, Austria\n\t\t\n\t\n\tR Development Core Team\n\n","document":{"$oid":"60c215127723bebd86646070"},"refKey":37},
{"_key":"60c215307723bebd86646086","_id":"references/60c215307723bebd86646086","_rev":"_cfFkzsO---","tei":"\n\t\n\t\tR: A language and environment for statistical computing\n\t\t\n\t\t\tR Core Team\n\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c215307723bebd86646085"},"refKey":34},
{"_key":"60c215307723bebd86646087","_id":"references/60c215307723bebd86646087","_rev":"_cfFkzsa---","tei":"\n\t\n\t\tBuilding Predictive Models inRUsing thecaretPackage\n\t\t\n\t\t\tMaxKuhn\n\t\t\n\t\t10.18637/jss.v028.i05\n\t\t\n\t\n\t\n\t\tJournal of Statistical Software\n\t\tJ. Stat. Soft.\n\t\t1548-7660\n\t\t\n\t\t\t28\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tFoundation for Open Access Statistic\n\t\t\n\t\n\n","document":{"$oid":"60c215307723bebd86646085"},"refKey":35},
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{"_key":"60c215b17723bebd86646106","_id":"references/60c215b17723bebd86646106","_rev":"_cfFkzue---","tei":"\n\t\n\t\tComputer visualization of three-dimensional image data using IMOD\n\t\t\n\t\t\tJRKremer\n\t\t\n\t\t\n\t\t\tDNMastronarde\n\t\t\n\t\t\n\t\t\tJR RMcintosh\n\t\t\n\t\n\t\n\t\tJ. Struct. Biol\n\t\t\n\t\t\t116\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c215b17723bebd86646103"},"refKey":38},
{"_key":"60c215cd7723bebd86646132","_id":"references/60c215cd7723bebd86646132","_rev":"_cfFkzuq---","tei":"\n\t\n\t\tjModelTest 2: more models, new heuristics and parallel computing\n\t\t\n\t\t\tDDarriba\n\t\t\n\t\t\n\t\t\tGLTaboada\n\t\t\n\t\t\n\t\t\tRDoallo\n\t\t\n\t\t\n\t\t\tDPosada\n\t\t\n\t\n\t\n\t\tNat. Methods\n\t\t\n\t\t\t9\n\t\t\t772\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c215cd7723bebd86646131"},"refKey":7},
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{"_key":"60c216387723bebd86646198","_id":"references/60c216387723bebd86646198","_rev":"_cfFkzvu---","tei":"\n\t\n\t\tSTAR: ultrafast universal RNA-seq aligner\n\t\t\n\t\t\tADobin\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t29\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c216387723bebd86646196"},"refKey":53},
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{"_key":"60c216477723bebd866461c5","_id":"references/60c216477723bebd866461c5","_rev":"_cfFkzwO---","tei":"\n\t\n\t\tPosterior Summarization in Bayesian Phylogenetics Using Tracer 1.7\n\t\t\n\t\t\tAndrewRambaut\n\t\t\n\t\t\n\t\t\tAlexeiJDrummond\n\t\t\n\t\t\n\t\t\tDongXie\n\t\t\n\t\t\n\t\t\tGuyBaele\n\t\t\n\t\t\n\t\t\tMarcASuchard\n\t\t\n\t\t10.1093/sysbio/syy032\n\t\t29718447\n\t\tPMC6101584\n\t\t\n\t\t\n\t\n\t\n\t\tSystematic Biology\n\t\t1063-5157\n\t\t1076-836X\n\t\t\n\t\t\t67\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c216477723bebd866461c2"},"refKey":24},
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{"_key":"60c216fe7723bebd86646271","_id":"references/60c216fe7723bebd86646271","_rev":"_cfFkzy----","tei":"\n\t\n\t\tSwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules\n\t\t\n\t\t\tAntoineDaina\n\t\t\n\t\t\n\t\t\tOlivierMichielin\n\t\t\n\t\t\n\t\t\tVincentZoete\n\t\t\n\t\t10.1038/srep42717\n\t\t28256516\n\t\tPMC5335600\n\t\t\n\t\t\n\t\n\t\n\t\tScientific Reports\n\t\tSci Rep\n\t\t2045-2322\n\t\t\n\t\t\t7\n\t\t\t1\n\t\t\t42717\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c216fe7723bebd8664626b"},"refKey":9},
{"_key":"60c216fe7723bebd86646272","_id":"references/60c216fe7723bebd86646272","_rev":"_cfFkzyK---","tei":"\n\t\n\t\tStructure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor\n\t\t\n\t\t\tJLan\n\t\t\n\t\t\n\t\t\tJGe\n\t\t\n\t\t\n\t\t\tJYu\n\t\t\n\t\t\n\t\t\tSShan\n\t\t\n\t\t\n\t\t\tHZhou\n\t\t\n\t\t\n\t\t\tSFan\n\t\t\n\t\t\n\t\t\tQZhang\n\t\t\n\t\t\n\t\t\tXShi\n\t\t\n\t\t\n\t\t\tQWang\n\t\t\n\t\t\n\t\t\tLZhang\n\t\t\n\t\t\n\t\t\tXWang\n\t\t\n\t\t10.1038/s41586-020-2180-5\n\t\t\n\t\n\t\n\t\tNature\n\t\t\n\t\t\t581\n\t\t\t7807\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c216fe7723bebd8664626b"},"refKey":26},
{"_key":"60c216fe7723bebd86646273","_id":"references/60c216fe7723bebd86646273","_rev":"_cfFkzyW---","tei":"\n\t\n\t\tStructural basis of receptor recognition by SARS-CoV-2\n\t\t\n\t\t\tJShang\n\t\t\n\t\t\n\t\t\tGYe\n\t\t\n\t\t\n\t\t\tKShi\n\t\t\n\t\t\n\t\t\tYWan\n\t\t\n\t\t\n\t\t\tCLuo\n\t\t\n\t\t\n\t\t\tHAihara\n\t\t\n\t\t\n\t\t\tQGeng\n\t\t\n\t\t\n\t\t\tAAuerbach\n\t\t\n\t\t\n\t\t\tFLi\n\t\t\n\t\t10.1038/s41586-020-2179-y\n\t\t\n\t\n\t\n\t\tNature\n\t\t\n\t\t\t581\n\t\t\t7807\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c216fe7723bebd8664626b"},"refKey":46},
{"_key":"60c2171e7723bebd866462a5","_id":"references/60c2171e7723bebd866462a5","_rev":"_cfFkzyi---","tei":"\n\t\n\t\tPrediction of continuous B-cell epitopes in an antigen using recurrent neural network\n\t\t\n\t\t\tSSaha\n\t\t\n\t\t\n\t\t\tGPRaghava\n\t\t\n\t\n\t\n\t\tProteins\n\t\t\n\t\t\t65\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":17},
{"_key":"60c2171e7723bebd866462a6","_id":"references/60c2171e7723bebd866462a6","_rev":"_cfFkzyu---","tei":"\n\t\n\t\tSWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling\n\t\t\n\t\t\tNGuex\n\t\t\n\t\t\n\t\t\tMCPeitsch\n\t\t\n\t\n\t\n\t\tElectrophoresis\n\t\t\n\t\t\t18\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":11},
{"_key":"60c2171e7723bebd866462a7","_id":"references/60c2171e7723bebd866462a7","_rev":"_cfFkzy6---","tei":"\n\t\n\t\tImproved method for predicting linear B-cell epitopes\n\t\t\n\t\t\tJELarsen\n\t\t\n\t\t\n\t\t\tOLund\n\t\t\n\t\t\n\t\t\tMNielsen\n\t\t\n\t\n\t\n\t\tImmunome Res\n\t\t\n\t\t\t2\n\t\t\t2\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":18},
{"_key":"60c2171e7723bebd866462a8","_id":"references/60c2171e7723bebd866462a8","_rev":"_cfFkzzG---","tei":"\n\t\n\t\tSWISS-MODEL: homology modelling of protein structures and complexes\n\t\t\n\t\t\tAWaterhouse\n\t\t\n\t\t\n\t\t\tMBertoni\n\t\t\n\t\t\n\t\t\tSBienert\n\t\t\n\t\t\n\t\t\tGStuder\n\t\t\n\t\t\n\t\t\tGTauriello\n\t\t\n\t\t\n\t\t\tRGumienny\n\t\t\n\t\t\n\t\t\tFTHeer\n\t\t\n\t\t\n\t\t\tTapDe Beer\n\t\t\n\t\t\n\t\t\tCRempfer\n\t\t\n\t\t\n\t\t\tLBordoli\n\t\t\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t46\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":9},
{"_key":"60c2171e7723bebd866462a9","_id":"references/60c2171e7723bebd866462a9","_rev":"_cfFkzzS---","tei":"\n\t\n\t\tThe Proteomics Protocols Handbook\n\t\t\n\t\t\tJMWalker\n\t\t\n\t\t10.1385/1592598900\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":7},
{"_key":"60c2171e7723bebd866462aa","_id":"references/60c2171e7723bebd866462aa","_rev":"_cfFkzze---","tei":"\n\t\n\t\tSequence and structure-based prediction of eukaryotic protein phosphorylation sites\n\t\t\n\t\t\tNBlom\n\t\t\n\t\t\n\t\t\tSGammeltoft\n\t\t\n\t\t\n\t\t\tSBrunak\n\t\t\n\t\n\t\n\t\tJ Mol Biol\n\t\t\n\t\t\t294\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":8},
{"_key":"60c2171e7723bebd866462ab","_id":"references/60c2171e7723bebd866462ab","_rev":"_cfFkzzu---","tei":"\n\t\n\t\tWebLogo: a sequence logo generator\n\t\t\n\t\t\tGECrooks\n\t\t\n\t\t\n\t\t\tGHon\n\t\t\n\t\t\n\t\t\tJMChandonia\n\t\t\n\t\t\n\t\t\tSEBrenner\n\t\t\n\t\n\t\n\t\tGenome Res\n\t\t\n\t\t\t14\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":21},
{"_key":"60c2171e7723bebd866462ac","_id":"references/60c2171e7723bebd866462ac","_rev":"_cfFkzz6---","tei":"\n\t\n\t\tSequence logos: a new way to display consensus sequences\n\t\t\n\t\t\tTDSchneider\n\t\t\n\t\t\n\t\t\tRMStephens\n\t\t\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t18\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2171e7723bebd866462a4"},"refKey":22},
{"_key":"60c2173a7723bebd866462cf","_id":"references/60c2173a7723bebd866462cf","_rev":"_cfFkz0G---","tei":"\n\t\n\t\tCPAchecker: A tool for configurable software verification\n\t\t\n\t\t\tDBeyer\n\t\t\n\t\t\n\t\t\tMEKeremoglu\n\t\t\n\t\n\t\n\t\tProc. CAV\n\t\t\t\tCAV\n\t\t\n\t\t\tSpringer\n\t\t\t\n\t\t\t6806\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2173a7723bebd866462ce"},"refKey":2},
{"_key":"60c2173a7723bebd866462d0","_id":"references/60c2173a7723bebd866462d0","_rev":"_cfFkz0S---","tei":"\n\t\n\t\tHybridTiger: Hybrid model checking and domination-based partitioning for efficient multi-goal test-suite generation (competition contribution)\n\t\t\n\t\t\tSRuland\n\t\t\n\t\t\n\t\t\tMLochau\n\t\t\n\t\t\n\t\t\tMCJakobs\n\t\t\n\t\n\t\n\t\tProc. FASE\n\t\t\t\tFASE\n\t\t\n\t\t\tSpringer\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2173a7723bebd866462ce"},"refKey":10},
{"_key":"60c2173a7723bebd866462d1","_id":"references/60c2173a7723bebd866462d1","_rev":"_cfFkz0a---","tei":"\n\t\n\t\tThe MathSAT5 SMT solver\n\t\t\n\t\t\tACimatti\n\t\t\n\t\t\n\t\t\tAGriggio\n\t\t\n\t\t\n\t\t\tBJSchaafsma\n\t\t\n\t\t\n\t\t\tRSebastiani\n\t\t\n\t\n\t\n\t\tProc. TACAS\n\t\t\t\tTACAS\n\t\t\n\t\t\tSpringer\n\t\t\t\n\t\t\t7795\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2173a7723bebd866462ce"},"refKey":6},
{"_key":"60c217607723bebd86646308","_id":"references/60c217607723bebd86646308","_rev":"_cfFkz0m---","tei":"\n\t\n\t\tShould health care demand interpretable artificial intelligence or accept "black box" medicine?\n\t\t\n\t\t\tFWang\n\t\t\n\t\t\n\t\t\tRKaushal\n\t\t\n\t\t\n\t\t\tDKhullar\n\t\t\n\t\t10.7326/M19-2548\n\t\t\n\t\t\n\t\t\t\n\t\t\tAnn Internal Med\n\t\t\n\t\n\n","document":{"$oid":"60c217607723bebd86646307"},"refKey":49},
{"_key":"60c217817723bebd8664631d","_id":"references/60c217817723bebd8664631d","_rev":"_cfFkz0y---","tei":"\n\t\n\t\tEnhanced taxonomy annotation of antiviral activity data from ChEMBL\n\t\t\n\t\t\tAnastasiaANikitina\n\t\t\n\t\t\n\t\t\tAlexeyAOrlov\n\t\t\n\t\t\n\t\t\tLiubovIKozlovskaya\n\t\t\n\t\t\n\t\t\tVladimirAPalyulin\n\t\t\n\t\t\n\t\t\tDmitryIOsolodkin\n\t\t\n\t\t10.1093/database/bay139\n\t\t30753475\n\t\t\n\t\n\t\n\t\tDatabase\n\t\t1758-0463\n\t\t\n\t\t\t2019\n\t\t\tbay139\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c217817723bebd8664631c"},"refKey":46},
{"_key":"60c217817723bebd8664631e","_id":"references/60c217817723bebd8664631e","_rev":"_cfFkz1----","tei":"\n\t\n\t\tSurprise, a Python Library for Recommender Systems\n\t\t\n\t\t\tNHug\n\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217817723bebd8664631c"},"refKey":54},
{"_key":"60c217817723bebd8664631f","_id":"references/60c217817723bebd8664631f","_rev":"_cfFkz1K---","tei":"\n\t\n\t\t\n\t\tKode srl, Dragon (Software for Molecular Descriptor Calculation)\n\t\t\t\t\n\t\t\t\n\t\t\n\t\n\t55) ICTV Master Species List\n\n","document":{"$oid":"60c217817723bebd8664631c"},"refKey":57},
{"_key":"60c217867723bebd8664632e","_id":"references/60c217867723bebd8664632e","_rev":"_cfFkz1W---","tei":"\n\t\n\t\tAligning sequence reads, clone sequences and assembly contigs with BWA-MEM\n\t\t\n\t\t\tHLi\n\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t00\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":65},
{"_key":"60c217867723bebd8664632f","_id":"references/60c217867723bebd8664632f","_rev":"_cfFkz1i---","tei":"\n\t\n\t\tAn amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar\n\t\t\n\t\t\tNathanDGrubaugh\n\t\t\n\t\t\n\t\t\tKarthikGangavarapu\n\t\t\n\t\t\n\t\t\tJoshuaQuick\n\t\t\n\t\t\n\t\t\tNathanielLMatteson\n\t\t\n\t\t\n\t\t\tJaquelineGoesDe Jesus\n\t\t\n\t\t\n\t\t\tBradleyJMain\n\t\t\n\t\t\n\t\t\tAmandaLTan\n\t\t\n\t\t\n\t\t\tLaurenMPaul\n\t\t\n\t\t\n\t\t\tDougEBrackney\n\t\t\n\t\t\n\t\t\tSaranGrewal\n\t\t\n\t\t\n\t\t\tNikosGurfield\n\t\t\n\t\t\n\t\t\tKoenK AVan Rompay\n\t\t\n\t\t\n\t\t\tSharonIsern\n\t\t\n\t\t\n\t\t\tScottFMichael\n\t\t\n\t\t\n\t\t\tLarkLCoffey\n\t\t\n\t\t\n\t\t\tNicholasJLoman\n\t\t\n\t\t\n\t\t\tKristianGAndersen\n\t\t\t0000-0001-6431-5982\n\t\t\n\t\t10.1186/s13059-018-1618-7\n\t\t30621750\n\t\tPMC6325816\n\t\t\n\t\n\t\n\t\tGenome Biology\n\t\tGenome Biol\n\t\t1474-760X\n\t\t\n\t\t\t20\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":27},
{"_key":"60c217867723bebd86646330","_id":"references/60c217867723bebd86646330","_rev":"_cfFkz1u---","tei":"\n\t\n\t\tA statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data\n\t\t\n\t\t\tHLi\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t27\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":66},
{"_key":"60c217867723bebd86646331","_id":"references/60c217867723bebd86646331","_rev":"_cfFkz12---","tei":"\n\t\n\t\tIntra-host sequence variability in human papillomavirus\n\t\t\n\t\t\tRachealSDube Mandishora\n\t\t\n\t\t\n\t\t\tKristinaSGjøtterud\n\t\t\n\t\t\n\t\t\tSonjaLagström\n\t\t\n\t\t\n\t\t\tBabillStray-Pedersen\n\t\t\n\t\t\n\t\t\tKerinaDuri\n\t\t\n\t\t\n\t\t\tNyashaChin'ombe\n\t\t\n\t\t\n\t\t\tMariNygård\n\t\t\n\t\t\n\t\t\tIreneKrausChristiansen\n\t\t\n\t\t\n\t\t\tOleHermanAmbur\n\t\t\n\t\t\n\t\t\tMikeZChirenje\n\t\t\n\t\t\n\t\t\tTrineBRounge\n\t\t\n\t\t10.1016/j.pvr.2018.04.006\n\t\t29723682\n\t\tPMC6047465\n\t\n\t\n\t\tPapillomavirus Research\n\t\tPapillomavirus Research\n\t\t2405-8521\n\t\t\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\tInternet\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":21},
{"_key":"60c217867723bebd86646332","_id":"references/60c217867723bebd86646332","_rev":"_cfFkz2C---","tei":"\n\t\n\t\tBEDTools: A flexible suite of utilities for comparing genomic features\n\t\t\n\t\t\tARQuinlan\n\t\t\n\t\t\n\t\t\tIMHall\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t26\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":67},
{"_key":"60c217867723bebd86646333","_id":"references/60c217867723bebd86646333","_rev":"_cfFkz2O---","tei":"\n\t\n\t\tTrimmomatic: A flexible trimmer for Illumina sequence data\n\t\t\n\t\t\tAMBolger\n\t\t\n\t\t\n\t\t\tMLohse\n\t\t\n\t\t\n\t\t\tBUsadel\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t30\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":64},
{"_key":"60c217867723bebd86646334","_id":"references/60c217867723bebd86646334","_rev":"_cfFkz2a---","tei":"\n\t\n\t\tFast processing of NGS alignment formats\n\t\t\n\t\t\tATarasov\n\t\t\n\t\t\n\t\t\tAJVilella\n\t\t\n\t\t\n\t\t\tECuppen\n\t\t\n\t\t\n\t\t\tIJNijman\n\t\t\n\t\t\n\t\t\tPPrins\n\t\t\n\t\t\n\t\t\tSambamba\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t31\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217867723bebd8664632d"},"refKey":63},
{"_key":"60c217937723bebd86646352","_id":"references/60c217937723bebd86646352","_rev":"_cfFkz2m---","tei":"\n\t\n\t\tFast and accurate short read alignment with Burrows-Wheeler transform\n\t\t\n\t\t\tHLi\n\t\t\n\t\t\n\t\t\tRDurbin\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t25\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217937723bebd86646351"},"refKey":34},
{"_key":"60c217b47723bebd86646385","_id":"references/60c217b47723bebd86646385","_rev":"_cfFkz2u---","tei":"\n\t\n\t\tR Foundation for Statistical Computing\n\t\n\t\n\t\tR Development Core Team T. A Language and Environment for Statistical Computing\n\t\t\t\tVienna, Austria\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c217b47723bebd86646384"},"refKey":23},
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{"_key":"60c2199b7723bebd86646595","_id":"references/60c2199b7723bebd86646595","_rev":"_cfFk0AC---","tei":"\n\t\n\t\tSTAR: ultrafast universal RNA-seq aligner\n\t\t\n\t\t\tADobin\n\t\t\n\t\t\n\t\t\tCADavis\n\t\t\n\t\t\n\t\t\tFSchlesinger\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t29\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2199b7723bebd8664658f"},"refKey":20},
{"_key":"60c2199b7723bebd86646596","_id":"references/60c2199b7723bebd86646596","_rev":"_cfFk0AO---","tei":"\n\t\n\t\tClusterprofiler: an R package for comparing biological themes among gene clusters\n\t\t\n\t\t\tGYu\n\t\t\n\t\t\n\t\t\tLGWang\n\t\t\n\t\t\n\t\t\tYHan\n\t\t\n\t\n\t\n\t\tOmics: J integr biol\n\t\t\n\t\t\t16\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2199b7723bebd8664658f"},"refKey":26},
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{"_key":"60c219e87723bebd866465d6","_id":"references/60c219e87723bebd866465d6","_rev":"_cfFk0Am---","tei":"\n\t\n\t\tR: A Language and Environment for Statistical Computing. R Core Team\n\t\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c219e87723bebd866465d5"},"refKey":18},
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{"_key":"60c21a037723bebd866465f8","_id":"references/60c21a037723bebd866465f8","_rev":"_cfFk0B----","tei":"\n\t\n\t\tHigh throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes\n\t\t\n\t\t\tMartaRHidalgo\n\t\t\n\t\t\n\t\t\tCankutCubuk\n\t\t\n\t\t\n\t\t\tAliciaAmadoz\n\t\t\n\t\t\n\t\t\tFranciscoSalavert\n\t\t\n\t\t\n\t\t\tJoséCarbonell-Caballero\n\t\t\n\t\t\n\t\t\tJoaquinDopazo\n\t\t\n\t\t10.18632/oncotarget.14107\n\t\t28042959\n\t\tPMC5354899\n\t\t\n\t\n\t\n\t\tOncotarget\n\t\tOncotarget\n\t\t1949-2553\n\t\t\n\t\t\t8\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tImpact Journals, LLC\n\t\t\n\t\n\n","document":{"$oid":"60c21a037723bebd866465f7"},"refKey":6},
{"_key":"60c21a177723bebd86646618","_id":"references/60c21a177723bebd86646618","_rev":"_cfFk0BK---","tei":"\n\t\n\t\tImproving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8\n\t\t\n\t\t\tElmarKrieger\n\t\t\n\t\t\n\t\t\tKeehyoungJoo\n\t\t\n\t\t\n\t\t\tJinwooLee\n\t\t\n\t\t\n\t\t\tJooyoungLee\n\t\t\n\t\t\n\t\t\tSrivatsanRaman\n\t\t\n\t\t\n\t\t\tJamesThompson\n\t\t\n\t\t\n\t\t\tMikeTyka\n\t\t\n\t\t\n\t\t\tDavidBaker\n\t\t\n\t\t\n\t\t\tKevinKarplus\n\t\t\n\t\t10.1002/prot.22570\n\t\t19768677\n\t\tPMC2922016\n\t\tark:/67375/WNG-0N7FWH3R-F\n\t\tCF1A39E796BEFF4969B0D21684FC34F5A4C1CACD\n\t\t\n\t\n\t\n\t\tProteins: Structure, Function, and Bioinformatics\n\t\tProteins\n\t\t0887-3585\n\t\t\n\t\t\t77\n\t\t\tS9\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\tCrossRef Medline\n\n","document":{"$oid":"60c21a177723bebd86646617"},"refKey":32},
{"_key":"60c21a447723bebd8664662b","_id":"references/60c21a447723bebd8664662b","_rev":"_cfFk0BW---","tei":"\n\t\n\t\t“Found in Translation”: predicting outcomes of complex organic chemistry reactions using neural sequence-to-sequence models\n\t\t\n\t\t\tPhilippeSchwaller\n\t\t\t0000-0003-3046-6576\n\t\t\n\t\t\n\t\t\tThéophileGaudin\n\t\t\n\t\t\n\t\t\tDávidLányi\n\t\t\n\t\t\n\t\t\tCostasBekas\n\t\t\n\t\t\n\t\t\tTeodoroLaino\n\t\t\n\t\t10.1039/c8sc02339e\n\t\t30090297\n\t\tPMC6053976\n\t\t\n\t\n\t\n\t\tChemical Science\n\t\tChem. Sci.\n\t\t2041-6520\n\t\t2041-6539\n\t\t\n\t\t\t9\n\t\t\t28\n\t\t\t\n\t\t\t\n\t\t\tRoyal Society of Chemistry (RSC)\n\t\t\n\t\n\n","document":{"$oid":"60c21a447723bebd8664662a"},"refKey":39},
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{"_key":"60c21a4a7723bebd86646633","_id":"references/60c21a4a7723bebd86646633","_rev":"_cfFk0CC---","tei":"\n\t\n\t\tTrimmomatic: a flexible trimmer for Illumina sequence data\n\t\t\n\t\t\tAMBolger\n\t\t\n\t\t\n\t\t\tMLohse\n\t\t\n\t\t\n\t\t\tBUsadel\n\t\t\n\t\n\t\n\t\tBioinforma Oxf Engl\n\t\t\n\t\t\t30\n\t\t\t15\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21a4a7723bebd8664662f"},"refKey":58},
{"_key":"60c21a4a7723bebd86646634","_id":"references/60c21a4a7723bebd86646634","_rev":"_cfFk0CO---","tei":"\n\t\n\t\tModerated estimation of fold change and dispersion for RNA-seq data with DESeq2\n\t\t\n\t\t\tMichaelILove\n\t\t\n\t\t\n\t\t\tWolfgangHuber\n\t\t\n\t\t\n\t\t\tSimonAnders\n\t\t\n\t\t10.1186/s13059-014-0550-8\n\t\t25516281\n\t\tPMC4302049\n\t\t\n\t\t\n\t\n\t\n\t\tGenome Biology\n\t\tGenome Biol\n\t\t1474-760X\n\t\t\n\t\t\t15\n\t\t\t12\n\t\t\t550\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c21a4a7723bebd8664662f"},"refKey":60},
{"_key":"60c21a517723bebd8664663f","_id":"references/60c21a517723bebd8664663f","_rev":"_cfFk0Ca---","tei":"\n\t\n\t\tA simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood\n\t\t\n\t\t\tSGuindon\n\t\t\n\t\t\n\t\t\tGascuel\n\t\t\n\t\n\t\n\t\teng. Syst. Biol\n\t\t1063-5157\n\t\t\n\t\t\t52\n\t\t\t\n\t\t\t\n\t\t\n\t\n\tPrint\n\n","document":{"$oid":"60c21a517723bebd8664663e"},"refKey":13},
{"_key":"60c21a517723bebd86646640","_id":"references/60c21a517723bebd86646640","_rev":"_cfFk0Cm---","tei":"\n\t\n\t\tBayesian Phylogenetics with BEAUti and the BEAST 1.7\n\t\t\n\t\t\tAlexeiJDrummond\n\t\t\n\t\t\n\t\t\tMarcASuchard\n\t\t\n\t\t\n\t\t\tDongXie\n\t\t\n\t\t\n\t\t\tAndrewRambaut\n\t\t\n\t\t10.1093/molbev/mss075\n\t\t22367748\n\t\tPMC3408070\n\t\t\n\t\n\t\n\t\tMolecular Biology and Evolution\n\t\t0737-4038\n\t\t1537-1719\n\t\t\n\t\t\t29\n\t\t\t8\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c21a517723bebd8664663e"},"refKey":6},
{"_key":"60c21a517723bebd86646641","_id":"references/60c21a517723bebd86646641","_rev":"_cfFk0Cy---","tei":"\n\t\n\t\tBEAST 2: A Software Platform for Bayesian Evolutionary Analysis\n\t\t\n\t\t\tRemcoBouckaert\n\t\t\n\t\t\n\t\t\tJosephHeled\n\t\t\n\t\t\n\t\t\tDeniseKühnert\n\t\t\n\t\t\n\t\t\tTimVaughan\n\t\t\n\t\t\n\t\t\tChieh-HsiWu\n\t\t\n\t\t\n\t\t\tDongXie\n\t\t\n\t\t\n\t\t\tMarcASuchard\n\t\t\n\t\t\n\t\t\tAndrewRambaut\n\t\t\n\t\t\n\t\t\tAlexeiJDrummond\n\t\t\n\t\t10.1371/journal.pcbi.1003537\n\t\t24722319\n\t\tPMC3985171\n\t\tDOI: 10.1371/ journal.pcbi.1003537\n\t\t\n\t\n\t\n\t\tPLoS Computational Biology\n\t\tPLoS Comput Biol\n\t\tPrlic A, e1003537\n\t\t1553-7358\n\t\t\n\t\t\t10\n\t\t\t4\n\t\t\te1003537\n\t\t\t\n\t\t\tPublic Library of Science (PLoS)\n\t\t\n\t\n\n","document":{"$oid":"60c21a517723bebd8664663e"},"refKey":1},
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{"_key":"60c21a7b7723bebd86646661","_id":"references/60c21a7b7723bebd86646661","_rev":"_cfFk0DS---","tei":"\n\t\n\t\tProtocol for rapid unsupervised cryo-EM structure determination using cryoSPARC software\n\t\t\n\t\t\tAliPunjani\n\t\t\n\t\t\n\t\t\tAliPunjani\n\t\t\n\t\t\n\t\t\tJohnRubinstein\n\t\t\n\t\t\n\t\t\tDavidFleet\n\t\t\n\t\t\n\t\t\tMarcusBrubaker\n\t\t\n\t\t10.1038/protex.2017.009\n\t\n\t\n\t\tProtocol Exchange\n\t\tProtocol Exchange\n\t\t2043-0116\n\t\t\n\t\t\t14\n\t\t\t\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c21a7b7723bebd8664665f"},"refKey":43},
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{"_key":"60c21b397723bebd86646720","_id":"references/60c21b397723bebd86646720","_rev":"_cfFk0Fm---","tei":"\n\t\n\t\tBasic local alignment search tool\n\t\t\n\t\t\tSFAltschul\n\t\t\n\t\t\n\t\t\tWGish\n\t\t\n\t\t\n\t\t\tWMiller\n\t\t\n\t\t\n\t\t\tEWMyers\n\t\t\n\t\t\n\t\t\tDJLipman\n\t\t\n\t\n\t\n\t\tJ Mol Biol\n\t\t\n\t\t\t215\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21b397723bebd8664671e"},"refKey":24},
{"_key":"60c21b497723bebd86646741","_id":"references/60c21b497723bebd86646741","_rev":"_cfFk0Fy---","tei":"\n\t\n\t\tPower 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences\n\t\t\n\t\t\tFFaul\n\t\t\n\t\t\n\t\t\tEErdfelder\n\t\t\n\t\t\n\t\t\tLangABuchner\n\t\t\n\t\t\n\t\t\tA\n\t\t\n\t\n\t\n\t\tBehav Res Methods\n\t\t\n\t\t\t39\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21b497723bebd86646740"},"refKey":40},
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{"_key":"60c21bd77723bebd866467a9","_id":"references/60c21bd77723bebd866467a9","_rev":"_cfFk0Gu---","tei":"\n\t\n\t\tBindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences\n\t\t\n\t\t\tLWang\n\t\t\n\t\t\n\t\t\tSJBrown\n\t\t\n\t\t10.1093/nar/gkl298\n\t\t16845003\n\t\tPMC1538853\n\t\tark:/67375/HXZ-FTH38QPZ-M\n\t\t3E718BA253CFA402CC67596D6CEA80616BFE240C\n\t\t\n\t\n\t\n\t\tNucleic Acids Research\n\t\tNucleic Acids Research\n\t\t0305-1048\n\t\t1362-4962\n\t\t\n\t\t\t34\n\t\t\tWeb Server\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\tWeb Server issue\n\n","document":{"$oid":"60c21bd77723bebd866467a6"},"refKey":43},
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{"_key":"60c21bd77723bebd866467b0","_id":"references/60c21bd77723bebd866467b0","_rev":"_cfFk0H6---","tei":"\n\t\n\t\tSPICKER: A clustering approach to identify near-native protein folds\n\t\t\n\t\t\tYangZhang\n\t\t\n\t\t\n\t\t\tJeffreySkolnick\n\t\t\n\t\t10.1002/jcc.20011\n\t\t15011258\n\t\tark:/67375/WNG-5B0BQ1K6-2\n\t\t6A95E4FDA70D8D6F8E3507E021496B3A62904D74\n\t\n\t\n\t\tJournal of Computational Chemistry\n\t\tJ. Comput. Chem.\n\t\t0192-8651\n\t\t1096-987X\n\t\t\n\t\t\t25\n\t\t\t6\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c21bd77723bebd866467a6"},"refKey":77},
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{"_key":"60c21bd77723bebd866467b2","_id":"references/60c21bd77723bebd866467b2","_rev":"_cfFk0IS---","tei":"\n\t\n\t\tA threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation\n\t\t\n\t\t\tMBrylinski\n\t\t\n\t\t\n\t\t\tJSkolnick\n\t\t\n\t\t10.1073/pnas.0707684105\n\t\t18165317\n\t\tPMC2224172\n\t\t\n\t\n\t\n\t\tProceedings of the National Academy of Sciences\n\t\tProceedings of the National Academy of Sciences\n\t\t0027-8424\n\t\t1091-6490\n\t\t\n\t\t\t105\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tProceedings of the National Academy of Sciences\n\t\t\n\t\n\n","document":{"$oid":"60c21bd77723bebd866467a6"},"refKey":78},
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{"_key":"60c21c197723bebd8664684b","_id":"references/60c21c197723bebd8664684b","_rev":"_cfFk0Iy---","tei":"\n\t\n\t\tThe PyMOL Molecular Graphics System\n\t\t\n\t\t\tSchro ¨dinger\n\t\t\n\t\t\n\t\t\tLlc\n\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21c197723bebd86646849"},"refKey":48},
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{"_key":"60c21c197723bebd8664684f","_id":"references/60c21c197723bebd8664684f","_rev":"_cfFk0Ji---","tei":"\n\t\n\t\tThe DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists\n\t\t\n\t\t\tDWHuang\n\t\t\n\t\t\n\t\t\tBTSherman\n\t\t\n\t\t\n\t\t\tQTan\n\t\t\n\t\t\n\t\t\tJRCollins\n\t\t\n\t\t\n\t\t\tWGAlvord\n\t\t\n\t\t\n\t\t\tJRoayaei\n\t\t\n\t\t\n\t\t\tRStephens\n\t\t\n\t\t\n\t\t\tMWBaseler\n\t\t\n\t\t\n\t\t\tHCLane\n\t\t\n\t\t\n\t\t\tRALempicki\n\t\t\n\t\n\t\n\t\tGenome Biol\n\t\t\n\t\t\t8\n\t\t\tR183\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21c197723bebd86646849"},"refKey":26},
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{"_key":"60c21eef7723bebd86646a44","_id":"references/60c21eef7723bebd86646a44","_rev":"_cfFk0QK---","tei":"\n\t\n\t\tReview Manager Web (RevMan Web) 2019\n\t\t\n\t\n\tRevman Web). Available from: revman.cochrane.org\n\n","document":{"$oid":"60c21eef7723bebd86646a43"},"refKey":87},
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{"_key":"60c21efa7723bebd86646a54","_id":"references/60c21efa7723bebd86646a54","_rev":"_cfFk0Qi---","tei":"\n\t\n\t\tBEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis\n\t\t\n\t\t\tRemcoBouckaert\n\t\t\t0000-0001-6765-3813\n\t\t\n\t\t\n\t\t\tTimothyGVaughan\n\t\t\n\t\t\n\t\t\tJoëlleBarido-Sottani\n\t\t\t0000-0002-5220-5468\n\t\t\n\t\t\n\t\t\tSebastiánDuchêne\n\t\t\t0000-0002-2863-0907\n\t\t\n\t\t\n\t\t\tMathieuFourment\n\t\t\t0000-0001-8153-9822\n\t\t\n\t\t\n\t\t\tAlexandraGavryushkina\n\t\t\n\t\t\n\t\t\tJosephHeled\n\t\t\t0000-0002-2403-7997\n\t\t\n\t\t\n\t\t\tGrahamJones\n\t\t\t0000-0002-9686-5871\n\t\t\n\t\t\n\t\t\tDeniseKühnert\n\t\t\t0000-0002-5657-018X\n\t\t\n\t\t\n\t\t\tNicolaDeMaio\n\t\t\t0000-0002-1776-8564\n\t\t\n\t\t\n\t\t\tMichaelMatschiner\n\t\t\n\t\t\n\t\t\tFábioKMendes\n\t\t\t0000-0001-6204-7208\n\t\t\n\t\t\n\t\t\tNicolaFMüller\n\t\t\n\t\t\n\t\t\tHuwOgilvie\n\t\t\t0000-0003-1589-6885\n\t\t\n\t\t\n\t\t\tLouisDuPlessis\n\t\t\n\t\t\n\t\t\tAlexPopinga\n\t\t\n\t\t\n\t\t\tAndrewRambaut\n\t\t\n\t\t\n\t\t\tDavidRasmussen\n\t\t\n\t\t\n\t\t\tIgorSiveroni\n\t\t\t0000-0003-2595-3062\n\t\t\n\t\t\n\t\t\tMarcASuchard\n\t\t\t0000-0001-9818-479X\n\t\t\n\t\t\n\t\t\tChieh-HsiWu\n\t\t\n\t\t\n\t\t\tDongXie\n\t\t\n\t\t\n\t\t\tChiZhang\n\t\t\t0000-0001-6009-5273\n\t\t\n\t\t\n\t\t\tTanjaStadler\n\t\t\n\t\t\n\t\t\tAlexeiJDrummond\n\t\t\t0000-0003-4454-2576\n\t\t\n\t\t10.1101/474296\n\t\t\n\t\n\t\n\t\tPLoS Comput Biol\n\t\t\n\t\t\t15\n\t\t\te1006650\n\t\t\t\n\t\t\tCold Spring Harbor Laboratory\n\t\t\n\t\n\n","document":{"$oid":"60c21efa7723bebd86646a52"},"refKey":15},
{"_key":"60c21f1b7723bebd86646a6a","_id":"references/60c21f1b7723bebd86646a6a","_rev":"_cfFk0Qq---","tei":"\n\t\n\t\tMAFFT multiple sequence alignment software version 7: improvements in performance and usability (outlines version 7)\n\t\t\n\t\t\tKStandley\n\t\t\n\t\n\t\n\t\tMol. Biol. Evol\n\t\t\n\t\t\t30\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f1b7723bebd86646a69"},"refKey":31},
{"_key":"60c21f1b7723bebd86646a6b","_id":"references/60c21f1b7723bebd86646a6b","_rev":"_cfFk0Q2---","tei":"\n\t\n\t\tJMod-elTest 2: More models, new heuristics and parallel computing\n\t\t\n\t\t\tDDarriba\n\t\t\n\t\t\n\t\t\tGLTaboada\n\t\t\n\t\t\n\t\t\tRDoallo\n\t\t\n\t\t\n\t\t\tDPosada\n\t\t\n\t\n\t\n\t\tNat. Methods\n\t\t\n\t\t\t9\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f1b7723bebd86646a69"},"refKey":7},
{"_key":"60c21f1b7723bebd86646a6c","_id":"references/60c21f1b7723bebd86646a6c","_rev":"_cfFk0RC---","tei":"\n\t\n\t\tApproximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative\n\t\t\n\t\t\tMAnisimova\n\t\t\n\t\t\n\t\t\tOGascuel\n\t\t\n\t\n\t\n\t\tSyst. Biol\n\t\t\n\t\t\t55\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f1b7723bebd86646a69"},"refKey":0},
{"_key":"60c21f1b7723bebd86646a6d","_id":"references/60c21f1b7723bebd86646a6d","_rev":"_cfFk0RO---","tei":"\n\t\n\t\tNew algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0\n\t\t\n\t\t\tSGuindon\n\t\t\n\t\t\n\t\t\tJFDufayard\n\t\t\n\t\t\n\t\t\tVLefort\n\t\t\n\t\t\n\t\t\tMAnisimova\n\t\t\n\t\t\n\t\t\tWHordijk\n\t\t\n\t\t\n\t\t\tOGascuel\n\t\t\n\t\n\t\n\t\tSyst. Biol\n\t\t\n\t\t\t59\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f1b7723bebd86646a69"},"refKey":22},
{"_key":"60c21f1f7723bebd86646a74","_id":"references/60c21f1f7723bebd86646a74","_rev":"_cfFk0Ra---","tei":"\n\t\n\t\tMEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0\n\t\t\n\t\t\tKTamura\n\t\t\n\t\t\n\t\t\tJDudley\n\t\t\n\t\t\n\t\t\tMNei\n\t\t\n\t\t\n\t\t\tSKumar\n\t\t\n\t\n\t\n\t\tMol. Biol. Evol\n\t\t\n\t\t\t24\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f1f7723bebd86646a73"},"refKey":25},
{"_key":"60c21f787723bebd86646a92","_id":"references/60c21f787723bebd86646a92","_rev":"_cfFk0Rm---","tei":"\n\t\n\t\tAutomated MAD and MIR structure solution\n\t\t\n\t\t\tThomasCTerwilliger\n\t\t\n\t\t\n\t\t\tJoelBerendzen\n\t\t\n\t\t10.1107/s0907444999000839\n\t\t10089316\n\t\tPMC2746121\n\t\tark:/67375/WNG-6990X6L4-P\n\t\t2FE8F0266CA4A6B01599B11B2A2306B9D6533034\n\t\t\n\t\n\t\n\t\tActa Crystallographica Section D Biological Crystallography\n\t\tActa Crystallogr D Biol Cryst\n\t\t0907-4449\n\t\t\n\t\t\t55\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tInternational Union of Crystallography (IUCr)\n\t\t\n\t\n\n","document":{"$oid":"60c21f787723bebd86646a91"},"refKey":67},
{"_key":"60c21f787723bebd86646a93","_id":"references/60c21f787723bebd86646a93","_rev":"_cfFk0Ru---","tei":"\n\t\n\t\tRefinement of macromolecular structures by the maximum-likelihood method\n\t\t\n\t\t\tGNMurshudov\n\t\t\n\t\t\n\t\t\tAAVagin\n\t\t\n\t\t\n\t\t\tEJDodson\n\t\t\n\t\n\t\n\t\tActa Crystallog. sect. D\n\t\t\n\t\t\t53\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f787723bebd86646a91"},"refKey":72},
{"_key":"60c21f787723bebd86646a94","_id":"references/60c21f787723bebd86646a94","_rev":"_cfFk0R6---","tei":"\n\t\n\t\tThe CCP4 suite: programs for protein crystallography\n\t\n\t\n\t\tActa Crystallog. sect. D\n\t\t\n\t\t\t50\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21f787723bebd86646a91"},"refKey":70},
{"_key":"60c21fa07723bebd86646ab6","_id":"references/60c21fa07723bebd86646ab6","_rev":"_cfFk0SG---","tei":"\n\t\n\t\tNIH Image to ImageJ: 25 years of image analysis\n\t\t\n\t\t\tCASchneider\n\t\t\n\t\t\n\t\t\tWSRasband\n\t\t\n\t\t\n\t\t\tKWEliceiri\n\t\t\n\t\n\t\n\t\tNat Methods\n\t\t\n\t\t\t9\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c21fa07723bebd86646ab5"},"refKey":47},
{"_key":"60c21fc57723bebd86646ad9","_id":"references/60c21fc57723bebd86646ad9","_rev":"_cfFk0SS---","tei":"\n\t\n\t\tMetaprop: a Stata command to perform meta-analysis of binomial data\n\t\t\n\t\t\tVNyaga\n\t\t\n\t\t\n\t\t\tMArbyn\n\t\t\n\t\t\n\t\t\tMAerts\n\t\t\n\t\t\n\t\t\t\n\t\t\tArchives of Public Health\n\t\t\t72\n\t\t\t39\n\t\t\n\t\n\n","document":{"$oid":"60c21fc57723bebd86646ad8"},"refKey":14},
{"_key":"60c21fc87723bebd86646ade","_id":"references/60c21fc87723bebd86646ade","_rev":"_cfFk0Se---","tei":"\n\t\n\t\tIntegrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal\n\t\t\n\t\t\tJGao\n\t\t\n\t\t\n\t\t\tBAAksoy\n\t\t\n\t\t\n\t\t\tUDogrusoz\n\t\t\n\t\t\n\t\t\tGDresdner\n\t\t\n\t\t\n\t\t\tBGross\n\t\t\n\t\t\n\t\t\tSOSumer\n\t\t\n\t\t\n\t\t\tYSun\n\t\t\n\t\t\n\t\t\tAJacobsen\n\t\t\n\t\t\n\t\t\tRSinha\n\t\t\n\t\t\n\t\t\tELarsson\n\t\t\n\t\t\n\t\t\tECerami\n\t\t\n\t\t\n\t\t\tCSander\n\t\t\n\t\t\n\t\t\tNSchultz\n\t\t\n\t\t10.1126/scisignal.2004088\n\t\t23550210\n\t\tPMC4160307\n\t\t\n\t\t\n\t\n\t\n\t\tScience Signaling\n\t\tScience Signaling\n\t\t1945-0877\n\t\t1937-9145\n\t\t\n\t\t\t6\n\t\t\t269\n\t\t\t\n\t\t\t\n\t\t\tAmerican Association for the Advancement of Science (AAAS)\n\t\t\n\t\n\n","document":{"$oid":"60c21fc87723bebd86646add"},"refKey":15},
{"_key":"60c21fc87723bebd86646adf","_id":"references/60c21fc87723bebd86646adf","_rev":"_cfFk0Sm---","tei":"\n\t\n\t\tThe cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.\n\t\t\n\t\t\tEthanCerami\n\t\t\n\t\t\n\t\t\tJianjiongGao\n\t\t\n\t\t\n\t\t\tUgurDogrusoz\n\t\t\n\t\t\n\t\t\tBenjaminEGross\n\t\t\n\t\t\n\t\t\tSelcukOnurSumer\n\t\t\n\t\t\n\t\t\tBülentArmanAksoy\n\t\t\n\t\t\n\t\t\tAndersJacobsen\n\t\t\n\t\t\n\t\t\tCaitlinJByrne\n\t\t\n\t\t\n\t\t\tMichaelLHeuer\n\t\t\n\t\t\n\t\t\tErikLarsson\n\t\t\n\t\t\n\t\t\tYevgeniyAntipin\n\t\t\n\t\t\n\t\t\tBorisReva\n\t\t\n\t\t\n\t\t\tArthurPGoldberg\n\t\t\n\t\t\n\t\t\tChrisSander\n\t\t\n\t\t\n\t\t\tNikolausSchultz\n\t\t\n\t\t10.1158/2159-8290.cd-12-0095\n\t\t22588877\n\t\tPMC3956037\n\t\t\n\t\t\n\t\n\t\n\t\tCancer Discovery\n\t\tCancer Discovery\n\t\t2159-8274\n\t\t2159-8290\n\t\t\n\t\t\t2\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tAmerican Association for Cancer Research (AACR)\n\t\t\n\t\n\n","document":{"$oid":"60c21fc87723bebd86646add"},"refKey":16},
{"_key":"60c220127723bebd86646b06","_id":"references/60c220127723bebd86646b06","_rev":"_cfFk0Sy---","tei":"\n\t\n\t\tKAAS: an automatic genome annotation and pathway reconstruction server\n\t\t\n\t\t\tYMoriya\n\t\t\n\t\t\n\t\t\tMItoh\n\t\t\n\t\t\n\t\t\tSOkuda\n\t\t\n\t\t\n\t\t\tACYoshizawa\n\t\t\n\t\t\n\t\t\tMKanehisa\n\t\t\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t35\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220127723bebd86646b05"},"refKey":29},
{"_key":"60c220127723bebd86646b07","_id":"references/60c220127723bebd86646b07","_rev":"_cfFk0T----","tei":"\n\t\n\t\tHigh-throughput functional annotation and data mining with the Blast2GO suite\n\t\t\n\t\t\tSGötz\n\t\t\n\t\t\n\t\t\tJMGarcíagómez\n\t\t\n\t\t\n\t\t\tJTerol\n\t\t\n\t\t\n\t\t\tTDWilliams\n\t\t\n\t\t\n\t\t\tSHNagaraj\n\t\t\n\t\t\n\t\t\tMJNueda\n\t\t\n\t\t\n\t\t\tMRobles\n\t\t\n\t\t\n\t\t\tMTalón\n\t\t\n\t\t\n\t\t\tJDopazo\n\t\t\n\t\t\n\t\t\tAConesa\n\t\t\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t36\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220127723bebd86646b05"},"refKey":28},
{"_key":"60c220237723bebd86646b1e","_id":"references/60c220237723bebd86646b1e","_rev":"_cfFk0TK---","tei":"\n\t\n\t\tIBM Corp. IBM SPSS Statistics for Windows VA. NY: IBM Corp\n\t\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220237723bebd86646b1d"},"refKey":26},
{"_key":"60c220317723bebd86646b26","_id":"references/60c220317723bebd86646b26","_rev":"_cfFk0TW---","tei":"\n\t\n\t\tCerebral Microbleeds: Histopathological Correlation of Neuroimaging\n\t\t\n\t\t\tAShoamanesh\n\t\t\n\t\t\n\t\t\tCSKwok\n\t\t\n\t\t\n\t\t\tOBenavente\n\t\t\n\t\t10.1159/000331466\n\t\t22104448\n\t\n\t\n\t\tCerebrovascular Diseases\n\t\tCerebrovasc Dis\n\t\t1015-9770\n\t\t1421-9786\n\t\t\n\t\t\t32\n\t\t\t6\n\t\t\t\n\t\t\t\n\t\t\tS. Karger AG\n\t\t\n\t\n\n","document":{"$oid":"60c220317723bebd86646b25"},"refKey":21},
{"_key":"60c220417723bebd86646b2d","_id":"references/60c220417723bebd86646b2d","_rev":"_cfFk0Te---","tei":"\n\t\n\t\tCovidence systematic review software\n\t\t\n\t\t\n\t\t\tVeritas Health Innovation\n\t\t\tMelbourne, Australia\n\t\t\n\t\n\n","document":{"$oid":"60c220417723bebd86646b2c"},"refKey":71},
{"_key":"60c220417723bebd86646b2e","_id":"references/60c220417723bebd86646b2e","_rev":"_cfFk0Tq---","tei":"\n\t\n\t\tImproving the usefulness of a tool for appraising the quality of qualitative, quantitative and mixed methods studies, the Mixed Methods Appraisal Tool (MMAT)\n\t\t\n\t\t\tQuanNhaHong\n\t\t\t0000-0002-2576-5750\n\t\t\n\t\t\n\t\t\tAraceliGonzalez-Reyes\n\t\t\n\t\t\n\t\t\tPierrePluye\n\t\t\n\t\t10.1111/jep.12884\n\t\t29464873\n\t\t\n\t\n\t\n\t\tJournal of Evaluation in Clinical Practice\n\t\tJ Eval Clin Pract\n\t\t1356-1294\n\t\t\n\t\t\t24\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\tversion\n\n","document":{"$oid":"60c220417723bebd86646b2c"},"refKey":72},
{"_key":"60c2204c7723bebd86646b37","_id":"references/60c2204c7723bebd86646b37","_rev":"_cfFk0T2---","tei":"\n\t\n\t\tAccurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ\n\t\t\n\t\t\tJCox\n\t\t\n\t\t\n\t\t\tMYHein\n\t\t\n\t\t\n\t\t\tCALuber\n\t\t\n\t\t\n\t\t\tIParon\n\t\t\n\t\t\n\t\t\tNNagaraj\n\t\t\n\t\t\n\t\t\tMMann\n\t\t\n\t\n\t\n\t\tMol. Cell. Proteomics\n\t\t\n\t\t\t13\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2204c7723bebd86646b36"},"refKey":52},
{"_key":"60c2204c7723bebd86646b38","_id":"references/60c2204c7723bebd86646b38","_rev":"_cfFk0UC---","tei":"\n\t\n\t\t\n\t\t\n\t\t\tGBricogne\n\t\t\n\t\t\n\t\t\tEBlanc\n\t\t\n\t\t\n\t\t\tMBrandl\n\t\t\n\t\t\n\t\t\tCFlensburg\n\t\t\n\t\t\n\t\t\tPKeller\n\t\t\n\t\t\n\t\t\tWPaciorek\n\t\t\n\t\t\n\t\t\tPRoversi\n\t\t\n\t\t\n\t\t\tASharff\n\t\t\n\t\t\n\t\t\tOSSmart\n\t\t\n\t\t\n\t\t\tCVonrhein\n\t\t\n\t\t\n\t\t\tTOWomack\n\t\t\n\t\n\t\n\t\tBUSTER (Global Phasing Ltd\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2204c7723bebd86646b36"},"refKey":40},
{"_key":"60c2204c7723bebd86646b39","_id":"references/60c2204c7723bebd86646b39","_rev":"_cfFk0UO---","tei":"\n\t\n\t\tMolProbity: all-atom structure validation for macromolecular crystallography\n\t\t\n\t\t\tVBChen\n\t\t\n\t\t\n\t\t\tWBArendall\n\t\t\n\t\t\n\t\t\tJJHeadd\n\t\t\n\t\t\n\t\t\tDAKeedy\n\t\t\n\t\t\n\t\t\tRMImmormino\n\t\t\n\t\t\n\t\t\tGJKapral\n\t\t\n\t\t\n\t\t\tLWMurray\n\t\t\n\t\t\n\t\t\tJSRichardson\n\t\t\n\t\t\n\t\t\tDCRichardson\n\t\t\n\t\t10.1107/97809553602060000884\n\t\n\t\n\t\tInternational Tables for Crystallography\n\t\t\t\t\n\t\t\tInternational Union of Crystallography\n\t\t\t\n\t\t\t66\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2204c7723bebd86646b36"},"refKey":42},
{"_key":"60c2204c7723bebd86646b3a","_id":"references/60c2204c7723bebd86646b3a","_rev":"_cfFk0Ua---","tei":"\n\t\n\t\tPHENIX: a comprehensive Python-based system for macromolecular structure solution\n\t\t\n\t\t\tPDAdams\n\t\t\n\t\t\n\t\t\tPVAfonine\n\t\t\n\t\t\n\t\t\tGBunkóczi\n\t\t\n\t\t\n\t\t\tVBChen\n\t\t\n\t\t\n\t\t\tIWDavis\n\t\t\n\t\t\n\t\t\tNEchols\n\t\t\n\t\t\n\t\t\tJJHeadd\n\t\t\n\t\t\n\t\t\tL-WHung\n\t\t\n\t\t\n\t\t\tGJKapral\n\t\t\n\t\t\n\t\t\tRWGrosse-Kunstleve\n\t\t\n\t\t\n\t\t\tAJMccoy\n\t\t\n\t\t\n\t\t\tNWMoriarty\n\t\t\n\t\t\n\t\t\tROeffner\n\t\t\n\t\t\n\t\t\tRJRead\n\t\t\n\t\t\n\t\t\tDCRichardson\n\t\t\n\t\t\n\t\t\tJSRichardson\n\t\t\n\t\t\n\t\t\tTCTerwilliger\n\t\t\n\t\t\n\t\t\tPHZwart\n\t\t\n\t\t10.1107/97809553602060000865\n\t\t\n\t\n\t\n\t\tInternational Tables for Crystallography\n\t\t\t\t\n\t\t\tInternational Union of Crystallography\n\t\t\t\n\t\t\t66\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2204c7723bebd86646b36"},"refKey":41},
{"_key":"60c2204c7723bebd86646b3b","_id":"references/60c2204c7723bebd86646b3b","_rev":"_cfFk0Ui---","tei":"\n\t\n\t\tUse of Non-crystallographic Symmetry in Protein Structure Refinement\n\t\t\n\t\t\tGJKleywegt\n\t\t\n\t\t10.1107/s0907444995016477\n\t\t15299650\n\t\tark:/67375/WNG-9W2PDSPC-4\n\t\t47AC288C2ECDEF2D8612218AD59A458364B86195\n\t\n\t\n\t\tActa Crystallographica Section D Biological Crystallography\n\t\tActa Cryst D\n\t\t0907-4449\n\t\t\n\t\t\t52\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tInternational Union of Crystallography (IUCr)\n\t\t\n\t\n\n","document":{"$oid":"60c2204c7723bebd86646b36"},"refKey":43},
{"_key":"60c2204c7723bebd86646b3c","_id":"references/60c2204c7723bebd86646b3c","_rev":"_cfFk0Uu---","tei":"\n\t\n\t\tHow good are my data and what is the resolution?\n\t\t\n\t\t\tPREvans\n\t\t\n\t\t\n\t\t\tGNMurshudov\n\t\t\n\t\n\t\n\t\tActa Crystallogr. D Biol. Crystallogr\n\t\t\n\t\t\t69\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2204c7723bebd86646b36"},"refKey":38},
{"_key":"60c2207a7723bebd86646b74","_id":"references/60c2207a7723bebd86646b74","_rev":"_cfFk0U6---","tei":"\n\t\n\t\tWallTop: Managing Overflowing Windows on a Large Display\n\t\t\n\t\t\tXiaojunBi\n\t\t\n\t\t\n\t\t\tSeok-HyungBae\n\t\t\n\t\t\n\t\t\tRavinBalakrishnan\n\t\t\n\t\t10.1080/07370024.2013.812411\n\t\n\t\n\t\tHuman–Computer Interaction\n\t\tHuman–Computer Interaction\n\t\t0737-0024\n\t\t1532-7051\n\t\t\n\t\t\t29\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\tInforma UK Limited\n\t\t\n\t\n\n","document":{"$oid":"60c2207a7723bebd86646b73"},"refKey":7},
{"_key":"60c2207a7723bebd86646b75","_id":"references/60c2207a7723bebd86646b75","_rev":"_cfFk0VG---","tei":"\n\t\n\t\tHiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples\n\t\t\n\t\t\tFritzLekschas\n\t\t\t0000-0001-8432-4835\n\t\t\n\t\t\n\t\t\tBenjaminBach\n\t\t\t0000-0002-9201-7744\n\t\t\n\t\t\n\t\t\tPeterKerpedjiev\n\t\t\t0000-0002-0454-1803\n\t\t\n\t\t\n\t\t\tNilsGehlenborg\n\t\t\t0000-0003-0327-8297\n\t\t\n\t\t\n\t\t\tHanspeterPfister\n\t\t\t0000-0002-3620-2582\n\t\t\n\t\t10.1101/123588\n\t\t\n\t\n\t\n\t\tIEEE Transactions on Visualization and Computer Graphics\n\t\t\n\t\t\t24\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tCold Spring Harbor Laboratory\n\t\t\n\t\n\n","document":{"$oid":"60c2207a7723bebd86646b73"},"refKey":30},
{"_key":"60c2207a7723bebd86646b76","_id":"references/60c2207a7723bebd86646b76","_rev":"_cfFk0VO---","tei":"\n\t\n\t\tThe HTML5 creation engine: Create beautiful digital content with the fastest, most flexible 2D WebGL renderer\n\t\t\n\t\t\tLtdGoodboy Digital\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2207a7723bebd86646b73"},"refKey":19},
{"_key":"60c220877723bebd86646bb5","_id":"references/60c220877723bebd86646bb5","_rev":"_cfFk0Va---","tei":"\n\t\n\t\tScikit-learn: Machine learning in Python\n\t\t\n\t\t\tFPedregosa\n\t\t\n\t\t\n\t\t\tGVaroquaux\n\t\t\n\t\t\n\t\t\tAGramfort\n\t\t\n\t\t\n\t\t\tVMichel\n\t\t\n\t\t\n\t\t\tBGrisel\n\t\t\n\t\t\n\t\t\tOBlondel\n\t\t\n\t\t\n\t\t\tMPre Enhofer\n\t\t\n\t\t\n\t\t\tPWeiss\n\t\t\n\t\t\n\t\t\tRDubourg\n\t\t\n\t\t\n\t\t\tV\n\t\t\n\t\n\t\n\t\tJournal of Machine Learning Research\n\t\t\n\t\t\t12\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220877723bebd86646bb4"},"refKey":4},
{"_key":"60c220927723bebd86646bbd","_id":"references/60c220927723bebd86646bbd","_rev":"_cfFk0Vm---","tei":"\n\t\n\t\tA simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood\n\t\t\n\t\t\tSGuindon\n\t\t\n\t\t\n\t\t\tOGascuel\n\t\t\n\t\n\t\n\t\tSyst Biol\n\t\t\n\t\t\t52\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220927723bebd86646bbc"},"refKey":18},
{"_key":"60c220927723bebd86646bbe","_id":"references/60c220927723bebd86646bbe","_rev":"_cfFk0Vy---","tei":"\n\t\n\t\tBayesian evolutionary analysis by sampling trees\n\t\t\n\t\t\tAlexeiJDrummond\n\t\t\n\t\t\n\t\t\tRemcoRBouckaert\n\t\t\n\t\t10.1017/cbo9781139095112.007\n\t\n\t\n\t\tBayesian Evolutionary Analysis with BEAST\n\t\t\t\t\n\t\t\tCambridge University Press\n\t\t\t2007\n\t\t\t7\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220927723bebd86646bbc"},"refKey":17},
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{"_key":"60c220af7723bebd86646be0","_id":"references/60c220af7723bebd86646be0","_rev":"_cfFk0Wq---","tei":"\n\t\n\t\tIntroduction to mediation, moderation, and conditional process analysis: A regression-based approach\n\t\t\n\t\t\tAFHayes\n\t\t\n\t\t\n\t\t\t\n\t\t\tGuilford Press\n\t\t\tNew York\n\t\t\n\t\n\n","document":{"$oid":"60c220af7723bebd86646bdf"},"refKey":20},
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{"_key":"60c220c07723bebd86646bea","_id":"references/60c220c07723bebd86646bea","_rev":"_cfFk0XC---","tei":"\n\t\n\t\tThe Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes\n\t\t\n\t\t\tToddJTreangen\n\t\t\n\t\t\n\t\t\tBrianDOndov\n\t\t\n\t\t\n\t\t\tSergeyKoren\n\t\t\n\t\t\n\t\t\tAdamMPhillippy\n\t\t\n\t\t10.1186/preaccept-2573980311437212\n\t\t25410596\n\t\tPMC4262987\n\t\t\n\t\n\t\n\t\tGenome Biology\n\t\tGenome Biol\n\t\t1465-6906\n\t\t\n\t\t\t15\n\t\t\t11\n\t\t\t524\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":50},
{"_key":"60c220c07723bebd86646beb","_id":"references/60c220c07723bebd86646beb","_rev":"_cfFk0XK---","tei":"\n\t\n\t\tSNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data: Table 1.\n\t\t\n\t\t\tChaseWNelson\n\t\t\n\t\t\n\t\t\tLouiseHMoncla\n\t\t\n\t\t\n\t\t\tAustinLHughes\n\t\t\n\t\t10.1093/bioinformatics/btv449\n\t\t26227143\n\t\tPMC4757956\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t31\n\t\t\tbtv449\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":32},
{"_key":"60c220c07723bebd86646bec","_id":"references/60c220c07723bebd86646bec","_rev":"_cfFk0XW---","tei":"\n\t\n\t\tCircos: an information aesthetic for comparative genomics\n\t\t\n\t\t\tMKrzywinski\n\t\t\n\t\t\n\t\t\tJSchein\n\t\t\n\t\t\n\t\t\tIBirol\n\t\t\n\t\t\n\t\t\tJConnors\n\t\t\n\t\t\n\t\t\tRGascoyne\n\t\t\n\t\t\n\t\t\tDHorsman\n\t\t\n\t\t\n\t\t\tSJJones\n\t\t\n\t\t\n\t\t\tMAMarra\n\t\t\n\t\n\t\n\t\tGenome Res\n\t\t\n\t\t\t19\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":21},
{"_key":"60c220c07723bebd86646bed","_id":"references/60c220c07723bebd86646bed","_rev":"_cfFk0Xi---","tei":"\n\t\n\t\tManta: Rapid detection of structural variants and indels for clinical sequencing applications\n\t\t\n\t\t\tXiaoyuChen\n\t\t\n\t\t\n\t\t\tOleSchulz-Trieglaff\n\t\t\n\t\t\n\t\t\tRichardShaw\n\t\t\n\t\t\n\t\t\tBretBarnes\n\t\t\n\t\t\n\t\t\tFelixSchlesinger\n\t\t\n\t\t\n\t\t\tAnthonyJCox\n\t\t\n\t\t\n\t\t\tSemyonKruglyak\n\t\t\n\t\t\n\t\t\tChristopherTSaunders\n\t\t\n\t\t10.1101/024232\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t32\n\t\t\t\n\t\t\t\n\t\t\tCold Spring Harbor Laboratory\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":5},
{"_key":"60c220c07723bebd86646bee","_id":"references/60c220c07723bebd86646bee","_rev":"_cfFk0Xu---","tei":"\n\t\n\t\tTransient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast\n\t\t\n\t\t\tDanielCJeffares\n\t\t\t0000-0001-7320-0706\n\t\t\n\t\t\n\t\t\tClemencyJolly\n\t\t\n\t\t\n\t\t\tMimozaHoti\n\t\t\n\t\t\n\t\t\tDougSpeed\n\t\t\n\t\t\n\t\t\tLiamShaw\n\t\t\n\t\t\n\t\t\tCharalamposRallis\n\t\t\n\t\t\n\t\t\tFrancoisBalloux\n\t\t\n\t\t\n\t\t\tChristopheDessimoz\n\t\t\n\t\t\n\t\t\tJürgBähler\n\t\t\n\t\t\n\t\t\tFritzJSedlazeck\n\t\t\n\t\t10.1101/047266\n\t\t\n\t\n\t\n\t\tNature Communications\n\t\t\n\t\t\t8\n\t\t\t14061\n\t\t\t\n\t\t\tCold Spring Harbor Laboratory\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":19},
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{"_key":"60c220c07723bebd86646bf0","_id":"references/60c220c07723bebd86646bf0","_rev":"_cfFk0YC---","tei":"\n\t\n\t\tA program for annotating and predicting the effects of single nucleotide polymorphisms\n\t\t\n\t\t\tPCingolani\n\t\t\n\t\t\n\t\t\tAPlatts\n\t\t\n\t\t\n\t\t\tLLWang\n\t\t\n\t\t\n\t\t\tMCoon\n\t\t\n\t\t\n\t\t\tTNguyen\n\t\t\n\t\t\n\t\t\tLWang\n\t\t\n\t\t\n\t\t\tSJLand\n\t\t\n\t\t\n\t\t\tXLu\n\t\t\n\t\t\n\t\t\tDMRuden\n\t\t\n\t\n\t\n\t\tSnpEff. Fly\n\t\t\n\t\t\t6\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":6},
{"_key":"60c220c07723bebd86646bf1","_id":"references/60c220c07723bebd86646bf1","_rev":"_cfFk0YO---","tei":"\n\t\n\t\tFast and accurate short read alignment with Burrows-Wheeler transform\n\t\t\n\t\t\tHLi\n\t\t\n\t\t\n\t\t\tRDurbin\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t25\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":25},
{"_key":"60c220c07723bebd86646bf2","_id":"references/60c220c07723bebd86646bf2","_rev":"_cfFk0Ya---","tei":"\n\t\n\t\tAligning sequence reads, clone sequences and assembly contigs with BWA-MEM\n\t\t\n\t\t\tHLi\n\t\t\n\t\tarXiv:13033997\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\tq-bio\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":24},
{"_key":"60c220c07723bebd86646bf3","_id":"references/60c220c07723bebd86646bf3","_rev":"_cfFk0Ym---","tei":"\n\t\n\t\tFast gapped-read alignment with Bowtie 2\n\t\t\n\t\t\tBLangmead\n\t\t\n\t\t\n\t\t\tSLSalzberg\n\t\t\n\t\n\t\n\t\tNature Methods\n\t\t\n\t\t\t9\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220c07723bebd86646be8"},"refKey":22},
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{"_key":"60c220fa7723bebd86646c38","_id":"references/60c220fa7723bebd86646c38","_rev":"_cfFk0Y6---","tei":"\n\t\n\t\tCytoscape: a software environment for integrated models of biomolecular interaction networks\n\t\t\n\t\t\tPShannon\n\t\t\n\t\n\t\n\t\tGenome Res\n\t\t\n\t\t\t13\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c220fa7723bebd86646c37"},"refKey":15},
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{"_key":"60c221337723bebd86646c6e","_id":"references/60c221337723bebd86646c6e","_rev":"_cfFk0Zq---","tei":"\n\t\n\t\tA hidden Markov model for predicting transmembrane helices in protein sequences\n\t\t\n\t\t\tELSonnhammer\n\t\t\n\t\t\n\t\t\tGVon Heijne\n\t\t\n\t\t\n\t\t\tAKrogh\n\t\t\n\t\n\t\n\t\tProc. Int. Conf. Intell. Syst. Mol. Biol\n\t\t\n\t\t\t6\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c221337723bebd86646c6b"},"refKey":20},
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{"_key":"60c221d87723bebd86646d15","_id":"references/60c221d87723bebd86646d15","_rev":"_cfFk0a2---","tei":"\n\t\n\t\tScikit-learn: machine learning in python\n\t\t\n\t\t\tFPedregosa\n\t\t\n\t\n\t\n\t\tJ. Mach. Learn. Res\n\t\t\n\t\t\t12\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c221d87723bebd86646d14"},"refKey":11},
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{"_key":"60c2223d7723bebd86646d63","_id":"references/60c2223d7723bebd86646d63","_rev":"_cfFk0bm---","tei":"\n\t\n\t\tBasic local alignment search tool\n\t\t\n\t\t\tSFAltschul\n\t\t\n\t\t\n\t\t\tWGish\n\t\t\n\t\t\n\t\t\tWMiller\n\t\t\n\t\t\n\t\t\tEWMyers\n\t\t\n\t\t\n\t\t\tDJLipman\n\t\t\n\t\n\t\n\t\tJ Mol Biol\n\t\t\n\t\t\t215\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2223d7723bebd86646d62"},"refKey":29},
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{"_key":"60c2223d7723bebd86646d66","_id":"references/60c2223d7723bebd86646d66","_rev":"_cfFk0cG---","tei":"\n\t\n\t\tPrediction of linear B-cell epitopes\n\t\t\n\t\t\tYa.IDavydov\n\t\t\n\t\t\n\t\t\tAGTonevitsky\n\t\t\n\t\t10.1134/s0026893309010208\n\t\tark:/67375/VQC-M6DSK52N-2\n\t\t4C313ADD7A3653EB45FA45B7225CD380FD022519\n\t\n\t\n\t\tMolecular Biology\n\t\tMol Biol\n\t\t0026-8933\n\t\t1608-3245\n\t\t\n\t\t\t43\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tPleiades Publishing Ltd\n\t\t\n\t\n\n","document":{"$oid":"60c2223d7723bebd86646d62"},"refKey":19},
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{"_key":"60c2223d7723bebd86646d68","_id":"references/60c2223d7723bebd86646d68","_rev":"_cfFk0ce---","tei":"\n\t\n\t\tPrediction of continuous B-cell epitopes in an antigen using recurrent neural network\n\t\t\n\t\t\tSSaha\n\t\t\n\t\t\n\t\t\tGpsRaghava\n\t\t\n\t\n\t\n\t\tProteins Struct Funct Bioinforma\n\t\t\n\t\t\t65\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2223d7723bebd86646d62"},"refKey":21},
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{"_key":"60c2241e7723bebd86646fab","_id":"references/60c2241e7723bebd86646fab","_rev":"_cfFk0ii---","tei":"\n\t\n\t\tHaplotype Estimation Using Sequencing Reads\n\t\t\n\t\t\tOlivierDelaneau\n\t\t\n\t\t\n\t\t\tBryanHowie\n\t\t\n\t\t\n\t\t\tAnthonyJCox\n\t\t\n\t\t\n\t\t\tJean-FrançoisZagury\n\t\t\n\t\t\n\t\t\tJonathanMarchini\n\t\t\n\t\t10.1016/j.ajhg.2013.09.002\n\t\t24094745\n\t\tPMC3791270\n\t\tdoi: 10.1016/ j.ajhg.2013.09.002\n\t\t\n\t\n\t\n\t\tThe American Journal of Human Genetics\n\t\tThe American Journal of Human Genetics\n\t\t0002-9297\n\t\t\n\t\t\t93\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c2241e7723bebd86646faa"},"refKey":25},
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{"_key":"60c2241e7723bebd86646fad","_id":"references/60c2241e7723bebd86646fad","_rev":"_cfFk0i6---","tei":"\n\t\n\t\tA Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies\n\t\t\n\t\t\tBryanNHowie\n\t\t\n\t\t\n\t\t\tPeterDonnelly\n\t\t\n\t\t\n\t\t\tJonathanMarchini\n\t\t\n\t\t10.1371/journal.pgen.1000529\n\t\t19543373\n\t\tPMC2689936\n\t\t\n\t\n\t\n\t\tPLoS Genetics\n\t\tPLoS Genet\n\t\t1553-7404\n\t\t\n\t\t\t5\n\t\t\t6\n\t\t\te1000529\n\t\t\t\n\t\t\tPublic Library of Science (PLoS)\n\t\t\n\t\n\n","document":{"$oid":"60c2241e7723bebd86646faa"},"refKey":26},
{"_key":"60c2241e7723bebd86646fae","_id":"references/60c2241e7723bebd86646fae","_rev":"_cfFk0jG---","tei":"\n\t\n\t\tVMD: Visual molecular dynamics\n\t\t\n\t\t\tWilliamHumphrey\n\t\t\n\t\t\n\t\t\tAndrewDalke\n\t\t\n\t\t\n\t\t\tKlausSchulten\n\t\t\n\t\t10.1016/0263-7855(96)00018-5\n\t\t8744570\n\t\t0263-7855(96)00018-5\n\t\tark:/67375/6H6-BXZWJ05D-M\n\t\t826C9E15BEBD4F117A7CD8C161EF5BF170F59B52\n\t\n\t\n\t\tJournal of Molecular Graphics\n\t\tJournal of Molecular Graphics\n\t\t0263-7855\n\t\t\n\t\t\t14\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c2241e7723bebd86646faa"},"refKey":46},
{"_key":"60c2247a7723bebd86646fd4","_id":"references/60c2247a7723bebd86646fd4","_rev":"_cfFk0jS---","tei":"\n\t\n\t\t\n\t\t\n\t\t\tFCunningham\n\t\t\n\t\t\n\t\t\tPAchuthan\n\t\t\n\t\t\n\t\t\tWAkanni\n\t\t\n\t\t\n\t\t\tJAllen\n\t\t\n\t\t\n\t\t\tMRAmode\n\t\t\n\t\t\n\t\t\tIMArmean\n\t\t\n\t\t\n\t\t\tRBennett\n\t\t\n\t\t\n\t\t\tJBhai\n\t\t\n\t\t\n\t\t\tKBillis\n\t\t\n\t\t\n\t\t\tSBoddu\n\t\t\n\t\t10.1093/nar/gky1113\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t47\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2247a7723bebd86646fd3"},"refKey":18},
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{"_key":"60c2249c7723bebd86647002","_id":"references/60c2249c7723bebd86647002","_rev":"_cfFk0jm---","tei":"\n\t\n\t\t« Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees\n\t\t\n\t\t\tKDYamada\n\t\t\n\t\t\n\t\t\tKTomii\n\t\t\n\t\t\n\t\t\tKKatoh\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t32\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2249c7723bebd86647001"},"refKey":51},
{"_key":"60c2249c7723bebd86647009","_id":"references/60c2249c7723bebd86647009","_rev":"_cfFk0jy---","tei":"\n\t\n\t\tR: a language and environment for statistical computing. vienna: R Foundation for Statistical Computing\n\t\t\n\t\t\tR Core Team\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2249c7723bebd86647008"},"refKey":15},
{"_key":"60c224bd7723bebd86647016","_id":"references/60c224bd7723bebd86647016","_rev":"_cfFk0k----","tei":"\n\t\n\t\tEsri support ArcMap 10.6 (10.6.1) [Internet]\n\t\t\n\t\t\tIncEsri\n\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c224bd7723bebd86647015"},"refKey":7},
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{"_key":"60c224c77723bebd86647022","_id":"references/60c224c77723bebd86647022","_rev":"_cfFk0ki---","tei":"\n\t\n\t\tReview: Protein Secondary Structure Prediction Continues to Rise\n\t\t\n\t\t\tBurkhardRost\n\t\t\n\t\t10.1006/jsbi.2001.4336\n\t\t11551180\n\t\tS1047-8477(01)94336-9\n\t\tark:/67375/6H6-12H66V6J-5\n\t\t3356FD8CF03B55F96BB4F64E14EAE73832016886\n\t\n\t\n\t\tJournal of Structural Biology\n\t\tJournal of Structural Biology\n\t\t1047-8477\n\t\t\n\t\t\t134\n\t\t\t2-3\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c224c77723bebd8664701f"},"refKey":45},
{"_key":"60c224c77723bebd86647023","_id":"references/60c224c77723bebd86647023","_rev":"_cfFk0ku---","tei":"\n\t\n\t\tProtein secondary structure prediction based on positionspecific scoring matrices\n\t\t\n\t\t\tDTJones\n\t\t\n\t\n\t\n\t\tJ Mol Biol\n\t\t\n\t\t\t292\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c224c77723bebd8664701f"},"refKey":46},
{"_key":"60c224c77723bebd86647024","_id":"references/60c224c77723bebd86647024","_rev":"_cfFk0k6---","tei":"\n\t\n\t\tHidden Markov models for detecting remote protein homologies\n\t\t\n\t\t\tKKarplus\n\t\t\n\t\t\n\t\t\tCBarrett\n\t\t\n\t\t\n\t\t\tRHughey\n\t\t\n\t\t10.1093/bioinformatics/14.10.846\n\t\t9927713\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t14\n\t\t\t10\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c224c77723bebd8664701f"},"refKey":47},
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{"_key":"60c224cd7723bebd86647044","_id":"references/60c224cd7723bebd86647044","_rev":"_cfFk0lS---","tei":"\n\t\n\t\tPyIR: A scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST\n\t\t\n\t\t\tCF JSoto\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\t\n\t\n\tin the press\n\n","document":{"$oid":"60c224cd7723bebd86647043"},"refKey":46},
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{"_key":"60c225337723bebd866470a0","_id":"references/60c225337723bebd866470a0","_rev":"_cfFk0mS---","tei":"\n\t\n\t\tSTRING 8 -A global view on proteins and their functional interactions in 630 organisms\n\t\t\n\t\t\tLJJensen\n\t\t\n\t\t\n\t\t\tMKuhn\n\t\t\n\t\t\n\t\t\tMStark\n\t\t\n\t\t\n\t\t\tSChaffron\n\t\t\n\t\t\n\t\t\tCCreevey\n\t\t\n\t\t\n\t\t\tJMuller\n\t\t\n\t\n\t\n\t\tNucleic Acids Res\n\t\t\n\t\t\t37\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c225337723bebd8664709d"},"refKey":13},
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{"_key":"60c225337723bebd866470a2","_id":"references/60c225337723bebd866470a2","_rev":"_cfFk0mq---","tei":"\n\t\n\t\tLê Cao KA. mixOmics: An R package for 'omics feature selection and multiple data integration\n\t\t\n\t\t\tFRohart\n\t\t\n\t\t\n\t\t\tBGautier\n\t\t\n\t\t\n\t\t\tASingh\n\t\t\n\t\n\t\n\t\tPLoS Comput Biol\n\t\t\n\t\t\t13\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c225337723bebd8664709d"},"refKey":23},
{"_key":"60c225337723bebd866470a3","_id":"references/60c225337723bebd866470a3","_rev":"_cfFk0my---","tei":"\n\t\n\t\tModerated estimation of fold change and dispersion for RNA-seq data with DESeq2\n\t\t\n\t\t\tMILove\n\t\t\n\t\t\n\t\t\tWHuber\n\t\t\n\t\t\n\t\t\tSAnders\n\t\t\n\t\n\t\n\t\tGenome Biol\n\t\t\n\t\t\t15\n\t\t\t550\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c225337723bebd8664709d"},"refKey":8},
{"_key":"60c225337723bebd866470a4","_id":"references/60c225337723bebd866470a4","_rev":"_cfFk0n----","tei":"\n\t\n\t\tCollaborative exploration of omics-data\n\t\t\n\t\t\tDSurujon\n\t\t\n\t\t\n\t\t\tTVan Opijnen\n\t\t\n\t\t\n\t\t\tShinyomics\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics. BMC Bioinformatics\n\t\t\n\t\t\t21\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c225337723bebd8664709d"},"refKey":20},
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{"_key":"60c2271c7723bebd86647272","_id":"references/60c2271c7723bebd86647272","_rev":"_cfFk0qi---","tei":"\n\t\n\t\tRefinement of macromolecular structures by the maximum-likelihood method\n\t\t\n\t\t\tGNMurshudov\n\t\t\n\t\t\n\t\t\tAAVagin\n\t\t\n\t\t\n\t\t\tEJDodson\n\t\t\n\t\n\t\n\t\tActa Crystallogr. D Biol. Crystallogr\n\t\t\n\t\t\t53\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2271c7723bebd86647271"},"refKey":45},
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{"_key":"60c227287723bebd86647287","_id":"references/60c227287723bebd86647287","_rev":"_cfFk0rG---","tei":"\n\t\n\t\tLIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins\n\t\t\n\t\t\tManfredHendlich\n\t\t\n\t\t\n\t\t\tFriedrichRippmann\n\t\t\n\t\t\n\t\t\tGerhardBarnickel\n\t\t\n\t\t10.1016/s1093-3263(98)00002-3\n\t\t9704298\n\t\tS1093-3263(98)00002-3\n\t\tark:/67375/6H6-5L4SJFLR-V\n\t\tD59968DEF7AE36A0D39A121C4B08EA21F2599A41\n\t\n\t\n\t\tJournal of Molecular Graphics and Modelling\n\t\tJournal of Molecular Graphics and Modelling\n\t\t1093-3263\n\t\t\n\t\t\t15\n\t\t\t6\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c227287723bebd86647284"},"refKey":67},
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{"_key":"60c227287723bebd8664728b","_id":"references/60c227287723bebd8664728b","_rev":"_cfFk0ry---","tei":"\n\t\n\t\tComprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins\n\t\t\n\t\t\tMarkGerstein\n\t\t\n\t\t\n\t\t\tMichaelLevitt\n\t\t\n\t\t10.1002/pro.5560070226\n\t\t9521122\n\t\tPMC2143933\n\t\t\n\t\n\t\n\t\tProtein Science\n\t\tProtein Science\n\t\t0961-8368\n\t\t1469-896X\n\t\t\n\t\t\t7\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c227287723bebd86647284"},"refKey":56},
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{"_key":"60c229197723bebd86647474","_id":"references/60c229197723bebd86647474","_rev":"_cfFk0yS---","tei":"\n\t\n\t\tPROCHECK: a program to check the stereochemical quality of protein structures\n\t\t\n\t\t\tRALaskowski\n\t\t\n\t\t\n\t\t\tMWMacarthur\n\t\t\n\t\t\n\t\t\tDSMoss\n\t\t\n\t\t\n\t\t\tJMThornton\n\t\t\n\t\t10.1107/s0021889892009944\n\t\tark:/67375/WNG-1V02WKNX-V\n\t\t7FF6EABFE5D6E9AB8536E310B9782B625E4CA368\n\t\t\n\t\n\t\n\t\tJournal of Applied Crystallography\n\t\tJ Appl Cryst\n\t\t0021-8898\n\t\t\n\t\t\t26\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\tInternational Union of Crystallography (IUCr)\n\t\t\n\t\n\n","document":{"$oid":"60c229197723bebd86647470"},"refKey":65},
{"_key":"60c229197723bebd86647475","_id":"references/60c229197723bebd86647475","_rev":"_cfFk0ye---","tei":"\n\t\n\t\tSWISS-MODEL: an automated protein homology-modeling server\n\t\t\n\t\t\tTSchwede\n\t\t\n\t\t\n\t\t\tJKopp\n\t\t\n\t\t\n\t\t\tNGuex\n\t\t\n\t\t\n\t\t\tMCPeitsch\n\t\t\n\t\t10.1093/nar/gkg520\n\t\t12824332\n\t\tPMC168927\n\t\tark:/67375/HXZ-ZGZG4B3V-C\n\t\tFD3DFE298FA3BFF15DD8573F36B4AD66B4421562\n\t\t\n\t\t\n\t\n\t\n\t\tNucleic Acids Research\n\t\tNucleic Acids Research\n\t\t1362-4962\n\t\t\n\t\t\t31\n\t\t\t13\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c229197723bebd86647470"},"refKey":67},
{"_key":"60c2291f7723bebd86647486","_id":"references/60c2291f7723bebd86647486","_rev":"_cfFk0ym---","tei":"\n\t\n\t\tAn algorithm-based topographical biomaterials library to instruct cell fate\n\t\t\n\t\t\tHVUnadkat\n\t\t\n\t\t\n\t\t\tMHulsman\n\t\t\n\t\t\n\t\t\tKCornelissen\n\t\t\n\t\t\n\t\t\tBJPapenburg\n\t\t\n\t\t\n\t\t\tRKTruckenmuller\n\t\t\n\t\t\n\t\t\tAECarpenter\n\t\t\n\t\t\n\t\t\tMWessling\n\t\t\n\t\t\n\t\t\tGFPost\n\t\t\n\t\t\n\t\t\tMUetz\n\t\t\n\t\t\n\t\t\tMJ TReinders\n\t\t\n\t\t\n\t\t\tDStamatialis\n\t\t\n\t\t\n\t\t\tCAVan Blitterswijk\n\t\t\n\t\t\n\t\t\tJDe Boer\n\t\t\n\t\t10.1073/pnas.1109861108\n\t\t21949368\n\t\tPMC3189082\n\t\t\n\t\n\t\n\t\tProceedings of the National Academy of Sciences\n\t\tProceedings of the National Academy of Sciences\n\t\t0027-8424\n\t\t1091-6490\n\t\t\n\t\t\t108\n\t\t\t40\n\t\t\t\n\t\t\t\n\t\t\tProceedings of the National Academy of Sciences\n\t\t\n\t\n\n","document":{"$oid":"60c2291f7723bebd86647485"},"refKey":226},
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{"_key":"60c229367723bebd8664749f","_id":"references/60c229367723bebd8664749f","_rev":"_cfFk0zK---","tei":"\n\t\n\t\tFastTree 2--approximately maximum-likelihood trees for large alignments\n\t\t\n\t\t\tMNPrice\n\t\t\n\t\t\n\t\t\tPSDehal\n\t\t\n\t\t\n\t\t\tAPArkin\n\t\t\n\t\n\t\n\t\tPloS one\n\t\t\n\t\t\t5\n\t\t\t3\n\t\t\te9490\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c229367723bebd8664749c"},"refKey":24},
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{"_key":"60c2297a7723bebd86647515","_id":"references/60c2297a7723bebd86647515","_rev":"_cfFk0ze---","tei":"\n\t\n\t\tConnective tissues: matrix composition and its relevance to physical therapy\n\t\t\n\t\t\tEMCulav\n\t\t\n\t\t\n\t\t\tCHClark\n\t\t\n\t\t\n\t\t\tMJMerrilees\n\t\t\n\t\n\t\n\t\tPhys Ther\n\t\t\n\t\t\t79\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2297a7723bebd86647514"},"refKey":35},
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{"_key":"60c229847723bebd8664751c","_id":"references/60c229847723bebd8664751c","_rev":"_cfFk0z2---","tei":"\n\t\n\t\tGene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles\n\t\t\n\t\t\tASubramanian\n\t\t\n\t\t\n\t\t\tPTamayo\n\t\t\n\t\t\n\t\t\tVKMootha\n\t\t\n\t\t\n\t\t\tSMukherjee\n\t\t\n\t\t\n\t\t\tBLEbert\n\t\t\n\t\t\n\t\t\tMAGillette\n\t\t\n\t\t\n\t\t\tAPaulovich\n\t\t\n\t\t\n\t\t\tSLPomeroy\n\t\t\n\t\t\n\t\t\tTRGolub\n\t\t\n\t\t\n\t\t\tESLander\n\t\t\n\t\t\n\t\t\tJPMesirov\n\t\t\n\t\t10.1073/pnas.0506580102\n\t\t16199517\n\t\tPMC1239896\n\t\t\n\t\n\t\n\t\tProceedings of the National Academy of Sciences\n\t\tProceedings of the National Academy of Sciences\n\t\t0027-8424\n\t\t1091-6490\n\t\t\n\t\t\t102\n\t\t\t43\n\t\t\t\n\t\t\t\n\t\t\tProceedings of the National Academy of Sciences\n\t\t\n\t\n\n","document":{"$oid":"60c229847723bebd8664751a"},"refKey":10},
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{"_key":"60c2298b7723bebd86647534","_id":"references/60c2298b7723bebd86647534","_rev":"_cfFk00O---","tei":"\n\t\n\t\tA grammar of data manipulation\n\t\t\n\t\t\tHWickham\n\t\t\n\t\t\n\t\t\tRFrancois\n\t\t\n\t\t\n\t\t\tL;Henry\n\t\t\n\t\t\n\t\t\tKMüller\n\t\t\n\t\t\n\t\t\tDplyr\n\t\t\n\t\t\n\t\t\n\t\n\tR package version 0.8.5. 2015.\n\n","document":{"$oid":"60c2298b7723bebd86647533"},"refKey":24},
{"_key":"60c2298b7723bebd86647535","_id":"references/60c2298b7723bebd86647535","_rev":"_cfFk00a---","tei":"\n\t\n\t\tEasily Tidy Data with 'spread()' and 'gather()' Functions. R package version 1.0.2\n\t\t\n\t\t\tHWickham\n\t\t\n\t\t\n\t\t\tLHenry\n\t\t\n\t\t\n\t\t\tTidyr\n\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c2298b7723bebd86647533"},"refKey":25},
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{"_key":"60c22a157723bebd86647558","_id":"references/60c22a157723bebd86647558","_rev":"_cfFk00u---","tei":"\n\t\n\t\tEstimating the relative risk in cohort studies and clinical trials of common outcomes\n\t\t\n\t\t\tLAMcnutt\n\t\t\n\t\t\n\t\t\tCWu\n\t\t\n\t\t\n\t\t\tXXue\n\t\t\n\t\t\n\t\t\tJPHafner\n\t\t\n\t\n\t\n\t\tAm J Epidemiol\n\t\t\n\t\t\t157\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22a157723bebd86647557"},"refKey":23},
{"_key":"60c22a157723bebd86647559","_id":"references/60c22a157723bebd86647559","_rev":"_cfFk006---","tei":"\n\t\n\t\tEasy SAS calculations for risk or prevalence ratios and differences\n\t\t\n\t\t\tDSpiegelman\n\t\t\n\t\t\n\t\t\tEHertzmark\n\t\t\n\t\n\t\n\t\tAm J Epidemiol\n\t\t\n\t\t\t162\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22a157723bebd86647557"},"refKey":24},
{"_key":"60c22a347723bebd86647565","_id":"references/60c22a347723bebd86647565","_rev":"_cfFk01G---","tei":"\n\t\n\t\tInteractive proofs in higher-order concurrent separation logic\n\t\t\n\t\t\tRobbertKrebbers\n\t\t\n\t\t\n\t\t\tAminTimany\n\t\t\n\t\t\n\t\t\tLarsBirkedal\n\t\t\n\t\t10.1145/3093333.3009855\n\t\t\n\t\n\t\n\t\tACM SIGPLAN Notices\n\t\tSIGPLAN Not.\n\t\tCastagna, G., Gordon, A.D.\n\t\t0362-1340\n\t\t\n\t\t\t52\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tAssociation for Computing Machinery (ACM)\n\t\t\n\t\n\n","document":{"$oid":"60c22a347723bebd86647564"},"refKey":18},
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{"_key":"60c22a347723bebd86647567","_id":"references/60c22a347723bebd86647567","_rev":"_cfFk01e---","tei":"\n\t\n\t\tMace: language support for building distributed systems\n\t\t\n\t\t\tCEKillian\n\t\t\n\t\t\n\t\t\tJWAnderson\n\t\t\n\t\t\n\t\t\tRBraud\n\t\t\n\t\t\n\t\t\tRJhala\n\t\t\n\t\t\n\t\t\tAVahdat\n\t\t\n\t\t10.1145/1250734.1250755\n\t\t\n\t\n\t\n\t\tProceedings of the ACM SIGPLAN 2007 Conference on Programming Language Design and Implementation\n\t\t\t\t\n\t\t\tJFerrante\n\t\t\tKSMckinley\n\t\t\n\t\tthe ACM SIGPLAN 2007 Conference on Programming Language Design and ImplementationSan Diego, California, USA\n\t\t\n\t\t\tACM\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22a347723bebd86647564"},"refKey":16},
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{"_key":"60c22b207723bebd86647663","_id":"references/60c22b207723bebd86647663","_rev":"_cfFk05K---","tei":"\n\t\n\t\tGenome Detective: an automated system for virus identification from high-throughput sequencing data\n\t\t\n\t\t\tMichaelVilsker\n\t\t\n\t\t\n\t\t\tYumnaMoosa\n\t\t\n\t\t\n\t\t\tSamNooij\n\t\t\n\t\t\n\t\t\tVagnerFonseca\n\t\t\n\t\t\n\t\t\tYoikaGhysens\n\t\t\n\t\t\n\t\t\tKorneelDumon\n\t\t\n\t\t\n\t\t\tRafPauwels\n\t\t\n\t\t\n\t\t\tLuizCarlosAlcantara\n\t\t\n\t\t\n\t\t\tEwoutVanden Eynden\n\t\t\n\t\t\n\t\t\tAnne-MiekeVandamme\n\t\t\n\t\t\n\t\t\tKoenDeforche\n\t\t\n\t\t\n\t\t\tTulioDe Oliveira\n\t\t\t0000-0002-3027-5254\n\t\t\n\t\t10.1093/bioinformatics/bty695\n\t\t30124794\n\t\t\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t35\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22b207723bebd86647662"},"refKey":20},
{"_key":"60c22b207723bebd86647664","_id":"references/60c22b207723bebd86647664","_rev":"_cfFk05W---","tei":"\n\t\n\t\tBasic local alignment search tool\n\t\t\n\t\t\tStephenFAltschul\n\t\t\n\t\t\n\t\t\tWarrenGish\n\t\t\n\t\t\n\t\t\tWebbMiller\n\t\t\n\t\t\n\t\t\tEugeneWMyers\n\t\t\n\t\t\n\t\t\tDavidJLipman\n\t\t\n\t\t10.1016/s0022-2836(05)80360-2\n\t\t2231712\n\t\tS0022-2836(05)80360-2\n\t\tark:/67375/6H6-H5SLNKXL-D\n\t\t9FFEE554E2AE49DB0AC69D4B43CB2DC4AFC66D6F\n\t\t\n\t\n\t\n\t\tJournal of Molecular Biology\n\t\tJournal of Molecular Biology\n\t\t0022-2836\n\t\t\n\t\t\t215\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c22b207723bebd86647662"},"refKey":22},
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{"_key":"60c22b5a7723bebd866476a3","_id":"references/60c22b5a7723bebd866476a3","_rev":"_cfFk07G---","tei":"\n\t\n\t\tImproved method for predicting linear Bcell epitopes\n\t\t\n\t\t\tJE PLarsen\n\t\t\n\t\t\n\t\t\tOLund\n\t\t\n\t\t\n\t\t\tMNielsen\n\t\t\n\t\n\t\n\t\tImmunome Res\n\t\t\n\t\t\t2\n\t\t\t2\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22b5a7723bebd866476a0"},"refKey":21},
{"_key":"60c22b5a7723bebd866476a4","_id":"references/60c22b5a7723bebd866476a4","_rev":"_cfFk07S---","tei":"\n\t\n\t\tImproved Method for Linear B-Cell Epitope Prediction Using Antigen’s Primary Sequence\n\t\t\n\t\t\tHarinderSingh\n\t\t\n\t\t\n\t\t\tHifzurRahmanAnsari\n\t\t\n\t\t\n\t\t\tGajendraP SRaghava\n\t\t\n\t\t10.1371/journal.pone.0062216\n\t\t23667458\n\t\tPMC3646881\n\t\t\n\t\n\t\n\t\tPLoS ONE\n\t\tPLoS ONE\n\t\t1932-6203\n\t\t\n\t\t\t8\n\t\t\t5\n\t\t\te62216\n\t\t\t\n\t\t\tPublic Library of Science (PLoS)\n\t\t\n\t\n\n","document":{"$oid":"60c22b5a7723bebd866476a0"},"refKey":36},
{"_key":"60c22b5a7723bebd866476a5","_id":"references/60c22b5a7723bebd866476a5","_rev":"_cfFk07e---","tei":"\n\t\n\t\tJModelTest: phylogenetic model averaging\n\t\t\n\t\t\tDPosada\n\t\t\n\t\n\t\n\t\tMol. Biol. Evol\n\t\t\n\t\t\t25\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22b5a7723bebd866476a0"},"refKey":28},
{"_key":"60c22b5a7723bebd866476a6","_id":"references/60c22b5a7723bebd866476a6","_rev":"_cfFk07q---","tei":"\n\t\n\t\tPredicting linear B‐cell epitopes using string kernels\n\t\t\n\t\t\tYasserEl‐manzalawy\n\t\t\n\t\t\n\t\t\tDrenaDobbs\n\t\t\n\t\t\n\t\t\tVasantHonavar\n\t\t\n\t\t10.1002/jmr.893\n\t\t18496882\n\t\tPMC2683948\n\t\tark:/67375/WNG-WGM67G2V-3\n\t\t6483283356B180D4365629B79073ABBEDE5C41A3\n\t\t\n\t\n\t\n\t\tJournal of Molecular Recognition\n\t\tJ. Mol. Recognit.\n\t\t0952-3499\n\t\t1099-1352\n\t\t\n\t\t\t21\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c22b5a7723bebd866476a0"},"refKey":12},
{"_key":"60c22b5a7723bebd866476a7","_id":"references/60c22b5a7723bebd866476a7","_rev":"_cfFk07y---","tei":"\n\t\n\t\tEpitopia: a web-server for predicting B-cell epitopes\n\t\t\n\t\t\tNimrodDRubinstein\n\t\t\n\t\t\n\t\t\tItayMayrose\n\t\t\n\t\t\n\t\t\tEricMartz\n\t\t\n\t\t\n\t\t\tTalPupko\n\t\t\n\t\t10.1186/1471-2105-10-287\n\t\t19751513\n\t\tPMC2751785\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\tBMC Bioinformatics\n\t\t1471-2105\n\t\t\n\t\t\t10\n\t\t\t1\n\t\t\t287\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22b5a7723bebd866476a0"},"refKey":31},
{"_key":"60c22b6a7723bebd866476bd","_id":"references/60c22b6a7723bebd866476bd","_rev":"_cfFk08----","tei":"\n\t\n\t\tFast, sensitive and accurate integration of single-cell data with Harmony\n\t\t\n\t\t\tIKorsunsky\n\t\t\n\t\t\n\t\t\tNMillard\n\t\t\n\t\t\n\t\t\tJFan\n\t\t\n\t\n\t\n\t\tNat Commun\n\t\t\n\t\t\t16\n\t\t\t12\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22b6a7723bebd866476bc"},"refKey":24},
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{"_key":"60c22b6a7723bebd866476bf","_id":"references/60c22b6a7723bebd866476bf","_rev":"_cfFk08W---","tei":"\n\t\n\t\tComprehensive integration of single cell data\n\t\t\n\t\t\tTimStuart\n\t\t\t0000-0002-3044-0897\n\t\t\n\t\t\n\t\t\tAndrewButler\n\t\t\t0000-0003-3608-0463\n\t\t\n\t\t\n\t\t\tPaulHoffman\n\t\t\t0000-0002-7693-8957\n\t\t\n\t\t\n\t\t\tChristophHafemeister\n\t\t\t0000-0001-6365-8254\n\t\t\n\t\t\n\t\t\tEfthymiaPapalexi\n\t\t\t0000-0001-5898-694X\n\t\t\n\t\t\n\t\t\tWilliamMMauck\n\t\t\n\t\t\n\t\t\tMarlonStoeckius\n\t\t\t0000-0002-5658-029X\n\t\t\n\t\t\n\t\t\tPeterSmibert\n\t\t\t0000-0003-0772-1647\n\t\t\n\t\t\n\t\t\tRahulSatija\n\t\t\t0000-0001-9448-8833\n\t\t\n\t\t10.1101/460147\n\t\t\n\t\n\t\n\t\tCell\n\t\t\n\t\t\t177\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tCold Spring Harbor Laboratory\n\t\t\n\t\n\n","document":{"$oid":"60c22b6a7723bebd866476bc"},"refKey":23},
{"_key":"60c22b6a7723bebd866476c0","_id":"references/60c22b6a7723bebd866476c0","_rev":"_cfFk08i---","tei":"\n\t\n\t\tggplot2: elegant graphics for data analysis\n\t\t\n\t\t\tHWickham\n\t\t\n\t\t\n\t\t\t\n\t\t\tSpringer-Verlag\n\t\t\tNew York\n\t\t\n\t\n\n","document":{"$oid":"60c22b6a7723bebd866476bc"},"refKey":25},
{"_key":"60c22b767723bebd866476d6","_id":"references/60c22b767723bebd866476d6","_rev":"_cfFk08u---","tei":"\n\t\n\t\t\n\t\t\n\t\t\tR-Project\n\t\t\n\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22b767723bebd866476d5"},"refKey":25},
{"_key":"60c22bbb7723bebd866476e1","_id":"references/60c22bbb7723bebd866476e1","_rev":"_cfFk082---","tei":"\n\t\n\t\tR: a language and environment for statistical computing\n\t\t\n\t\t\tR Core Team\n\t\t\n\t\n\t\n\t\tR Foundation for Statistical Computing\n\t\t\t\tVienna, Austria\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22bbb7723bebd866476e0"},"refKey":34},
{"_key":"60c22bc87723bebd866476f0","_id":"references/60c22bc87723bebd866476f0","_rev":"_cfFk09C---","tei":"\n\t\n\t\tEnrichr: interactive and collaborative HTML5 gene list enrichment analysis tool\n\t\t\n\t\t\tEdwardYChen\n\t\t\n\t\t\n\t\t\tChristopherMTan\n\t\t\n\t\t\n\t\t\tYanKou\n\t\t\n\t\t\n\t\t\tQiaonanDuan\n\t\t\n\t\t\n\t\t\tZichenWang\n\t\t\n\t\t\n\t\t\tGabrielaMeirelles\n\t\t\n\t\t\n\t\t\tNeilRClark\n\t\t\n\t\t\n\t\t\tAviMa’ayan\n\t\t\n\t\t10.1186/1471-2105-14-128\n\t\t23586463\n\t\tPMC3637064\n\t\t\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\tBMC Bioinformatics\n\t\t1471-2105\n\t\t\n\t\t\t14\n\t\t\t1\n\t\t\t128\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22bc87723bebd866476ef"},"refKey":34},
{"_key":"60c22bc87723bebd866476f1","_id":"references/60c22bc87723bebd866476f1","_rev":"_cfFk09O---","tei":"\n\t\n\t\tEnrichr: a comprehensive gene set enrichment analysis web server 2016 update\n\t\t\n\t\t\tMaximVKuleshov\n\t\t\n\t\t\n\t\t\tMatthewRJones\n\t\t\n\t\t\n\t\t\tAndrewDRouillard\n\t\t\n\t\t\n\t\t\tNicolasFFernandez\n\t\t\n\t\t\n\t\t\tQiaonanDuan\n\t\t\n\t\t\n\t\t\tZichenWang\n\t\t\n\t\t\n\t\t\tSimonKoplev\n\t\t\n\t\t\n\t\t\tSherryLJenkins\n\t\t\n\t\t\n\t\t\tKathleenMJagodnik\n\t\t\n\t\t\n\t\t\tAlexanderLachmann\n\t\t\n\t\t\n\t\t\tMichaelGMcdermott\n\t\t\n\t\t\n\t\t\tCarolineDMonteiro\n\t\t\n\t\t\n\t\t\tGregoryWGundersen\n\t\t\n\t\t\n\t\t\tAviMa'ayan\n\t\t\n\t\t10.1093/nar/gkw377\n\t\t27141961\n\t\tPMC4987924\n\t\t\n\t\t\n\t\n\t\n\t\tNucleic Acids Research\n\t\tNucleic Acids Res\n\t\t0305-1048\n\t\t1362-4962\n\t\t\n\t\t\t44\n\t\t\tW1\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22bc87723bebd866476ef"},"refKey":35},
{"_key":"60c22bc87723bebd866476f2","_id":"references/60c22bc87723bebd866476f2","_rev":"_cfFk09a---","tei":"\n\t\n\t\tlimma powers differential expression analyses for RNA-sequencing and microarray studies\n\t\t\n\t\t\tMatthewERitchie\n\t\t\n\t\t\n\t\t\tBelindaPhipson\n\t\t\n\t\t\n\t\t\tDiWu\n\t\t\n\t\t\n\t\t\tYifangHu\n\t\t\n\t\t\n\t\t\tCharityWLaw\n\t\t\n\t\t\n\t\t\tWeiShi\n\t\t\n\t\t\n\t\t\tGordonKSmyth\n\t\t\n\t\t10.1093/nar/gkv007\n\t\t25605792\n\t\tPMC4402510\n\t\t\n\t\t\n\t\n\t\n\t\tNucleic Acids Research\n\t\t0305-1048\n\t\t1362-4962\n\t\t\n\t\t\t43\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22bc87723bebd866476ef"},"refKey":24},
{"_key":"60c22bc87723bebd866476f3","_id":"references/60c22bc87723bebd866476f3","_rev":"_cfFk09u---","tei":"\n\t\n\t\tAnalyzing biological network parameters with CentiScaPe\n\t\t\n\t\t\tGiovanniScardoni\n\t\t\n\t\t\n\t\t\tMichelePetterlini\n\t\t\n\t\t\n\t\t\tCarloLaudanna\n\t\t\n\t\t10.1093/bioinformatics/btp517\n\t\t19729372\n\t\tPMC2781755\n\t\t\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t25\n\t\t\t21\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22bc87723bebd866476ef"},"refKey":33},
{"_key":"60c22bf37723bebd86647722","_id":"references/60c22bf37723bebd86647722","_rev":"_cfFk096---","tei":"\n\t\n\t\tSocial Media Engagement and the Critical Care Medicine Community\n\t\t\n\t\t\tSeanSBarnes\n\t\t\n\t\t\n\t\t\tVirenKaul\n\t\t\n\t\t\n\t\t\tSapnaRKudchadkar\n\t\t\n\t\t10.1177/0885066618769599\n\t\t29699469\n\t\t\n\t\n\t\n\t\tJournal of Intensive Care Medicine\n\t\tJ Intensive Care Med\n\t\t0885-0666\n\t\t1525-1489\n\t\t\n\t\t\t34\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tSAGE Publications\n\t\t\n\t\n\n","document":{"$oid":"60c22bf37723bebd86647721"},"refKey":16},
{"_key":"60c22bfd7723bebd8664772c","_id":"references/60c22bfd7723bebd8664772c","_rev":"_cfFk1-K---","tei":"\n\t\n\t\tMinimal genetic differentiation between Girella nigricans and Girella simplicidens (perciformes: Kyphosidae)\n\t\t\n\t\t\tTNiu\n\t\t\n\t\t\n\t\t\tZSQin\n\t\t\n\t\t\n\t\t\tXXu\n\t\t\n\t\t\n\t\t\tJSLiu\n\t\t\n\t\n\t\n\t\tIsozyme Bull\n\t\t\n\t\t\t17\n\t\t\t66\n\t\t\t\n\t\t\n\t\t\n\t\t\tDepartment of Statistics, Harvard University\n\t\t\n\t\n\tTechnical Report\n\tButh DG\n\n","document":{"$oid":"60c22bfd7723bebd8664772b"},"refKey":24},
{"_key":"60c22bfd7723bebd8664772d","_id":"references/60c22bfd7723bebd8664772d","_rev":"_cfFk1-W---","tei":"\n\t\n\t\tA Coalescence-Guided Hierarchical Bayesian Method for Haplotype Inference\n\t\t\n\t\t\tYuZhang\n\t\t\n\t\t\n\t\t\tTianhuaNiu\n\t\t\n\t\t\n\t\t\tJunSLiu\n\t\t\n\t\t10.1086/506276\n\t\t16826521\n\t\tPMC1559491\n\t\n\t\n\t\tThe American Journal of Human Genetics\n\t\tThe American Journal of Human Genetics\n\t\t0002-9297\n\t\t\n\t\t\t79\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c22bfd7723bebd8664772b"},"refKey":48},
{"_key":"60c22bfd7723bebd8664772e","_id":"references/60c22bfd7723bebd8664772e","_rev":"_cfFk1-i---","tei":"\n\t\n\t\tA new statistical method for haplotype reconstruction from population data\n\t\t\n\t\t\tMStephens\n\t\t\n\t\t\n\t\t\tNJSmith\n\t\t\n\t\t\n\t\t\tPDonnelly\n\t\t\n\t\n\t\n\t\tAm J Hum Genet\n\t\t\n\t\t\t68\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22bfd7723bebd8664772b"},"refKey":38},
{"_key":"60c22bfd7723bebd8664772f","_id":"references/60c22bfd7723bebd8664772f","_rev":"_cfFk1-u---","tei":"\n\t\n\t\tAccounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation\n\t\t\n\t\t\tMatthewStephens\n\t\t\n\t\t\n\t\t\tPaulScheet\n\t\t\n\t\t10.1086/428594\n\t\t15700229\n\t\tPMC1196397\n\t\t\n\t\n\t\n\t\tThe American Journal of Human Genetics\n\t\tThe American Journal of Human Genetics\n\t\t0002-9297\n\t\t\n\t\t\t76\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c22bfd7723bebd8664772b"},"refKey":36},
{"_key":"60c22bfd7723bebd86647730","_id":"references/60c22bfd7723bebd86647730","_rev":"_cfFk1_----","tei":"\n\t\n\t\tArlequin: a software for population genetics data analysis. Ver 2.000\n\t\t\n\t\t\tSSchneider\n\t\t\n\t\t\n\t\t\tDRoessli\n\t\t\n\t\t\n\t\t\tLExcoffier\n\t\t\n\t\t\n\t\t\t\n\t\t\tGeneva\n\t\t\n\t\t\n\t\t\tGenetics and Biometry Laboratory, Department of Anthropology, University of Geneva\n\t\t\n\t\n\n","document":{"$oid":"60c22bfd7723bebd8664772b"},"refKey":32},
{"_key":"60c22c0a7723bebd86647741","_id":"references/60c22c0a7723bebd86647741","_rev":"_cfFk1_K---","tei":"\n\t\n\t\tProtein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks\n\t\t\n\t\t\tYangShen\n\t\t\n\t\t\n\t\t\tAdBax\n\t\t\n\t\t10.1007/s10858-013-9741-y\n\t\t23728592\n\t\tPMC3701756\n\t\tark:/67375/VQC-Q48MD066-V\n\t\t00E6A5A20BB975BF97629455A0B9F35CF8BF78AE\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Biomolecular NMR\n\t\tJ Biomol NMR\n\t\t0925-2738\n\t\t1573-5001\n\t\t\n\t\t\t56\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22c0a7723bebd86647740"},"refKey":23},
{"_key":"60c22c0a7723bebd86647742","_id":"references/60c22c0a7723bebd86647742","_rev":"_cfFk1_W---","tei":"\n\t\n\t\tNMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy\n\t\t\n\t\t\tWoongheeLee\n\t\t\n\t\t\n\t\t\tMarcoTonelli\n\t\t\n\t\t\n\t\t\tJohnLMarkley\n\t\t\n\t\t10.1093/bioinformatics/btu830\n\t\t25505092\n\t\tPMC4393527\n\t\t\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t1367-4803\n\t\t1460-2059\n\t\t\n\t\t\t31\n\t\t\t8\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22c0a7723bebd86647740"},"refKey":18},
{"_key":"60c22c137723bebd8664774c","_id":"references/60c22c137723bebd8664774c","_rev":"_cfFk1_m---","tei":"\n\t\n\t\tMUSCLE: multiple sequence alignment with improved accuracy and speed\n\t\t\n\t\t\tRCEdgar\n\t\t\n\t\t10.1109/csb.2004.1332560\n\t\n\t\n\t\tProceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.\n\t\t\t\t2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004\n\t\t\n\t\t\tIEEE\n\t\t\t2004\n\t\t\t32\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c137723bebd8664774b"},"refKey":12},
{"_key":"60c22c287723bebd8664775a","_id":"references/60c22c287723bebd8664775a","_rev":"_cfFk1_2---","tei":"\n\t\n\t\tIQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies\n\t\t\n\t\t\tLam-TungNguyen\n\t\t\n\t\t\n\t\t\tHeikoASchmidt\n\t\t\n\t\t\n\t\t\tArndtVon Haeseler\n\t\t\n\t\t\n\t\t\tBuiQuangMinh\n\t\t\n\t\t10.1093/molbev/msu300\n\t\t25371430\n\t\tPMC4271533\n\t\t\n\t\t\n\t\n\t\n\t\tMolecular Biology and Evolution\n\t\t0737-4038\n\t\t1537-1719\n\t\t\n\t\t\t32\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22c287723bebd86647759"},"refKey":25},
{"_key":"60c22c287723bebd8664775b","_id":"references/60c22c287723bebd8664775b","_rev":"_cfFk1AG---","tei":"\n\t\n\t\tFast gapped-read alignment with Bowtie 2\n\t\t\n\t\t\tBenLangmead\n\t\t\n\t\t\n\t\t\tStevenLSalzberg\n\t\t\n\t\t10.1038/nmeth.1923\n\t\t22388286\n\t\tPMC3322381\n\t\t\n\t\t\n\t\n\t\n\t\tNature Methods\n\t\tNat Methods\n\t\t1548-7091\n\t\t1548-7105\n\t\t\n\t\t\t9\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22c287723bebd86647759"},"refKey":22},
{"_key":"60c22c287723bebd8664775c","_id":"references/60c22c287723bebd8664775c","_rev":"_cfFk1AS---","tei":"\n\t\n\t\tExploiting sparseness in de novo genome assembly\n\t\t\n\t\t\tChengxiYe\n\t\t\n\t\t\n\t\t\tZhanshanSamMa\n\t\t\n\t\t\n\t\t\tCharlesHCannon\n\t\t\n\t\t\n\t\t\tMihaiPop\n\t\t\n\t\t\n\t\t\tDouglasWYu\n\t\t\n\t\t10.1186/1471-2105-13-s6-s1\n\t\t22537038\n\t\tPMC3369186\n\t\t\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\tBMC Bioinformatics\n\t\t1471-2105\n\t\t\n\t\t\t13\n\t\t\tS6\n\t\t\tS1\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\tSuppl\n\n","document":{"$oid":"60c22c287723bebd86647759"},"refKey":23},
{"_key":"60c22c5f7723bebd86647784","_id":"references/60c22c5f7723bebd86647784","_rev":"_cfFk1Ae---","tei":"\n\t\n\t\tjModelTest: Phylogenetic Model Averaging\n\t\t\n\t\t\tDPosada\n\t\t\n\t\t10.1093/molbev/msn083\n\t\t18397919\n\t\t\n\t\t\n\t\n\t\n\t\tMolecular Biology and Evolution\n\t\tMolecular Biology and Evolution\n\t\t0737-4038\n\t\t1537-1719\n\t\t\n\t\t\t25\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22c5f7723bebd86647783"},"refKey":30},
{"_key":"60c22c5f7723bebd86647785","_id":"references/60c22c5f7723bebd86647785","_rev":"_cfFk1Au---","tei":"\n\t\n\t\tNew Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0\n\t\t\n\t\t\tStéphaneGuindon\n\t\t\n\t\t\n\t\t\tJean-FrançoisDufayard\n\t\t\n\t\t\n\t\t\tVincentLefort\n\t\t\n\t\t\n\t\t\tMariaAnisimova\n\t\t\n\t\t\n\t\t\tWimHordijk\n\t\t\n\t\t\n\t\t\tOlivierGascuel\n\t\t\n\t\t10.1093/sysbio/syq010\n\t\t20525638\n\t\tark:/67375/HXZ-7QZH87D3-D\n\t\t6DBD85CA8FB8FB58836EFA0CE5A853C1C9B7AF77\n\t\t\n\t\t\n\t\n\t\n\t\tSystematic Biology\n\t\t1063-5157\n\t\t1076-836X\n\t\t\n\t\t\t59\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c22c5f7723bebd86647783"},"refKey":19},
{"_key":"60c22c727723bebd866477a3","_id":"references/60c22c727723bebd866477a3","_rev":"_cfFk1A6---","tei":"\n\t\n\t\tBitter or not? BitterPredict, a tool for predicting taste from chemical structure\n\t\t\n\t\t\tAyanaDagan-Wiener\n\t\t\n\t\t\n\t\t\tIdoNissim\n\t\t\n\t\t\n\t\t\tNatalieBen Abu\n\t\t\n\t\t\n\t\t\tGigliolaBorgonovo\n\t\t\n\t\t\n\t\t\tAngelaBassoli\n\t\t\t0000-0001-5442-3808\n\t\t\n\t\t\n\t\t\tMashaYNiv\n\t\t\n\t\t10.1038/s41598-017-12359-7\n\t\t28935887\n\t\tPMC5608695\n\t\t\n\t\n\t\n\t\tScientific Reports\n\t\tSci Rep\n\t\t2045-2322\n\t\t\n\t\t\t7\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22c727723bebd866477a2"},"refKey":36},
{"_key":"60c22c7e7723bebd866477b8","_id":"references/60c22c7e7723bebd866477b8","_rev":"_cfFk1BG---","tei":"\n\t\n\t\tMEGA6: molecular evolutionary genetics analysis version 6.0\n\t\t\n\t\t\tKTamura\n\t\t\n\t\t\n\t\t\tGStecher\n\t\t\n\t\t\n\t\t\tDPeterson\n\t\t\n\t\t\n\t\t\tAFilipski\n\t\t\n\t\t\n\t\t\tSKumar\n\t\t\n\t\n\t\n\t\tMol. Biol. Evol\n\t\t\n\t\t\t30\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c7e7723bebd866477b7"},"refKey":53},
{"_key":"60c22c7e7723bebd866477b9","_id":"references/60c22c7e7723bebd866477b9","_rev":"_cfFk1BS---","tei":"\n\t\n\t\tFast computation of distance estimators\n\t\t\n\t\t\tIsaacElias\n\t\t\n\t\t\n\t\t\tJensLagergren\n\t\t\n\t\t10.1186/1471-2105-8-89\n\t\t17355623\n\t\tPMC1831791\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\tBMC Bioinformatics\n\t\t1471-2105\n\t\t\n\t\t\t8\n\t\t\t1\n\t\t\t89\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22c7e7723bebd866477b7"},"refKey":30},
{"_key":"60c22c7e7723bebd866477ba","_id":"references/60c22c7e7723bebd866477ba","_rev":"_cfFk1Be---","tei":"\n\t\n\t\tMUSCLE: multiple sequence alignment with improved accuracy and speed\n\t\t\n\t\t\tRCEdgar\n\t\t\n\t\t10.1109/csb.2004.1332560\n\t\n\t\n\t\tProceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.\n\t\t\t\t2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004\n\t\t\n\t\t\tIEEE\n\t\t\t2004\n\t\t\t32\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c7e7723bebd866477b7"},"refKey":25},
{"_key":"60c22c7e7723bebd866477bb","_id":"references/60c22c7e7723bebd866477bb","_rev":"_cfFk1Bq---","tei":"\n\t\n\t\tBioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT\n\t\t\n\t\t\tTAHall\n\t\t\n\t\n\t\n\t\tNucl. Acids Symp\n\t\t\n\t\t\t41\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c7e7723bebd866477b7"},"refKey":34},
{"_key":"60c22c7e7723bebd866477bc","_id":"references/60c22c7e7723bebd866477bc","_rev":"_cfFk1B2---","tei":"\n\t\n\t\tTreeDyn: towards dynamic graphics and annotations for analyses of trees\n\t\t\n\t\t\tFChevenet\n\t\t\n\t\t\n\t\t\tCBrun\n\t\t\n\t\t\n\t\t\tALBanuls\n\t\t\n\t\t\n\t\t\tBJacq\n\t\t\n\t\t\n\t\t\tRChisten\n\t\t\n\t\n\t\n\t\tBMC Bioinformatics\n\t\t\n\t\t\t7\n\t\t\t439\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c7e7723bebd866477b7"},"refKey":19},
{"_key":"60c22c7e7723bebd866477bd","_id":"references/60c22c7e7723bebd866477bd","_rev":"_cfFk1CC---","tei":"\n\t\n\t\tPhytools: an R package for phylogenetic comparative biology (and other things)\n\t\t\n\t\t\tLJRevell\n\t\t\n\t\n\t\n\t\tMethods Ecol. Evol\n\t\t\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c7e7723bebd866477b7"},"refKey":47},
{"_key":"60c22c997723bebd866477d4","_id":"references/60c22c997723bebd866477d4","_rev":"_cfFk1CO---","tei":"\n\t\n\t\tVMD: Visual molecular dynamics\n\t\t\n\t\t\tWHumphrey\n\t\t\n\t\t\n\t\t\tADalke\n\t\t\n\t\t\n\t\t\tKSchulten\n\t\t\n\t\n\t\n\t\tJ Mol Graph\n\t\t\n\t\t\t14\n\t\t\t1\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22c997723bebd866477d3"},"refKey":43},
{"_key":"60c22ca37723bebd866477db","_id":"references/60c22ca37723bebd866477db","_rev":"_cfFk1Ca---","tei":"\n\t\n\t\tSociodigital Transformation towards Excellent Leadership and Labour\n\t\teLLa4.0\n\t\t\n\t\t\n\t\t\t\n\t\t\t27\n\t\t\n\t\n\n","document":{"$oid":"60c22ca37723bebd866477da"},"refKey":76},
{"_key":"60c22cc57723bebd866477ff","_id":"references/60c22cc57723bebd866477ff","_rev":"_cfFk1Cm---","tei":"\n\t\n\t\t\n\t\t\tFRonquist\n\t\t\n\t\t\n\t\tTreeFitter. Ver. 1.0. Software avialable via\n\t\t\t\tUppsala, Sweden\n\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\tUppsala University\n\t\t\n\t\n\n","document":{"$oid":"60c22cc57723bebd866477fe"},"refKey":18},
{"_key":"60c22cc57723bebd86647800","_id":"references/60c22cc57723bebd86647800","_rev":"_cfFk1Cy---","tei":"\n\t\n\t\tProfile hidden Markov models\n\t\t\n\t\t\tSREddy\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t14\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22cc57723bebd866477fe"},"refKey":5},
{"_key":"60c22cc57723bebd86647801","_id":"references/60c22cc57723bebd86647801","_rev":"_cfFk1D----","tei":"\n\t\n\t\tCONSEL: for assessing the confidence of phylogenetic tree selection\n\t\t\n\t\t\tHShimodaira\n\t\t\n\t\t\n\t\t\tMHasegawa\n\t\t\n\t\n\t\n\t\tBioinformatics\n\t\t\n\t\t\t17\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22cc57723bebd866477fe"},"refKey":23},
{"_key":"60c22d1a7723bebd86647819","_id":"references/60c22d1a7723bebd86647819","_rev":"_cfFk1DK---","tei":"\n\t\n\t\tBasic local alignment search tool\n\t\t\n\t\t\tStephenFAltschul\n\t\t\n\t\t\n\t\t\tWarrenGish\n\t\t\n\t\t\n\t\t\tWebbMiller\n\t\t\n\t\t\n\t\t\tEugeneWMyers\n\t\t\n\t\t\n\t\t\tDavidJLipman\n\t\t\n\t\t10.1016/s0022-2836(05)80360-2\n\t\t2231712\n\t\tS0022-2836(05)80360-2\n\t\tark:/67375/6H6-H5SLNKXL-D\n\t\t9FFEE554E2AE49DB0AC69D4B43CB2DC4AFC66D6F\n\t\n\t\n\t\tJournal of Molecular Biology\n\t\tJournal of Molecular Biology\n\t\t0022-2836\n\t\t\n\t\t\t215\n\t\t\t3\n\t\t\t\n\t\t\t\n\t\t\tElsevier BV\n\t\t\n\t\n\n","document":{"$oid":"60c22d1a7723bebd86647818"},"refKey":3},
{"_key":"60c22d397723bebd86647830","_id":"references/60c22d397723bebd86647830","_rev":"_cfFk1DW---","tei":"\n\t\n\t\tAutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility\n\t\t\n\t\t\tGarrettMMorris\n\t\t\n\t\t\n\t\t\tRuthHuey\n\t\t\n\t\t\n\t\t\tWilliamLindstrom\n\t\t\n\t\t\n\t\t\tMichelFSanner\n\t\t\n\t\t\n\t\t\tRichardKBelew\n\t\t\n\t\t\n\t\t\tDavidSGoodsell\n\t\t\n\t\t\n\t\t\tArthurJOlson\n\t\t\n\t\t10.1002/jcc.21256\n\t\t19399780\n\t\tPMC2760638\n\t\tark:/67375/WNG-6ZSR67R7-3\n\t\t775A7298E971DC0C81CE8CD659D4D80B2457569A\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Computational Chemistry\n\t\tJ. Comput. Chem.\n\t\t0192-8651\n\t\t1096-987X\n\t\t\n\t\t\t30\n\t\t\t16\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c22d397723bebd8664782f"},"refKey":20},
{"_key":"60c22d397723bebd86647831","_id":"references/60c22d397723bebd86647831","_rev":"_cfFk1Di---","tei":"\n\t\n\t\tOpen Babel: An open chemical toolbox\n\t\t\n\t\t\tNoelMO'boyle\n\t\t\n\t\t\n\t\t\tMichaelBanck\n\t\t\n\t\t\n\t\t\tCraigAJames\n\t\t\n\t\t\n\t\t\tChrisMorley\n\t\t\n\t\t\n\t\t\tTimVandermeersch\n\t\t\n\t\t\n\t\t\tGeoffreyRHutchison\n\t\t\n\t\t10.1186/1758-2946-3-33\n\t\t21982300\n\t\tPMC3198950\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Cheminformatics\n\t\tJournal of Cheminformatics\n\t\t1758-2946\n\t\t\n\t\t\t3\n\t\t\t1\n\t\t\t33\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22d397723bebd8664782f"},"refKey":22},
{"_key":"60c22d397723bebd86647832","_id":"references/60c22d397723bebd86647832","_rev":"_cfFk1Du---","tei":"\n\t\n\t\tAutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading\n\t\t\n\t\t\tOlegTrott\n\t\t\n\t\t\n\t\t\tArthurJOlson\n\t\t\n\t\t10.1002/jcc.21334\n\t\t19499576\n\t\tPMC3041641\n\t\tark:/67375/WNG-RW8L5TL2-G\n\t\t4E9BFB7586BE5C9BD62C7BFF997C88C1A5FFD30A\n\t\t\n\t\t\n\t\n\t\n\t\tJournal of Computational Chemistry\n\t\tJ. Comput. Chem.\n\t\t0192-8651\n\t\t1096-987X\n\t\t\n\t\t\t31\n\t\t\t2\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c22d397723bebd8664782f"},"refKey":34},
{"_key":"60c22d397723bebd86647833","_id":"references/60c22d397723bebd86647833","_rev":"_cfFk1D6---","tei":"\n\t\n\t\t\n\t\t\tMJAbraham\n\t\t\n\t\t\n\t\t\tDVan Der Spoel\n\t\t\n\t\t\n\t\t\tELindahl\n\t\t\n\t\t\n\t\t\tBHess\n\t\t\n\t\t\n\t\tGROMACS user manual\n\t\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22d397723bebd8664782f"},"refKey":0},
{"_key":"60c22d397723bebd86647834","_id":"references/60c22d397723bebd86647834","_rev":"_cfFk1EG---","tei":"\n\t\n\t\tLigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery\n\t\t\n\t\t\tRomanALaskowski\n\t\t\n\t\t\n\t\t\tMarkBSwindells\n\t\t\n\t\t10.1021/ci200227u\n\t\t21919503\n\t\t\n\t\n\t\n\t\tJournal of Chemical Information and Modeling\n\t\tJ. Chem. Inf. Model.\n\t\t1549-9596\n\t\t1549-960X\n\t\t\n\t\t\t51\n\t\t\t10\n\t\t\t\n\t\t\t\n\t\t\tAmerican Chemical Society (ACS)\n\t\t\n\t\n\n","document":{"$oid":"60c22d397723bebd8664782f"},"refKey":16},
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{"_key":"60c22d9a7723bebd866478b1","_id":"references/60c22d9a7723bebd866478b1","_rev":"_cfFk1GK---","tei":"\n\t\n\t\tProHits-viz: a suite of web tools for visualizing interaction proteomics data\n\t\t\n\t\t\tJamesD RKnight\n\t\t\n\t\t\n\t\t\tHyungwonChoi\n\t\t\n\t\t\n\t\t\tGaganDGupta\n\t\t\n\t\t\n\t\t\tLaurencePelletier\n\t\t\t0000-0003-1171-4618\n\t\t\n\t\t\n\t\t\tBrianRaught\n\t\t\n\t\t\n\t\t\tAlexeyINesvizhskii\n\t\t\t0000-0002-2806-7819\n\t\t\n\t\t\n\t\t\tAnne-ClaudeGingras\n\t\t\n\t\t10.1038/nmeth.4330\n\t\t28661499\n\t\tPMC5831326\n\t\t\n\t\n\t\n\t\tNature Methods\n\t\tNat Methods\n\t\t1548-7091\n\t\t1548-7105\n\t\t\n\t\t\t14\n\t\t\t7\n\t\t\t\n\t\t\t\n\t\t\tSpringer Nature\n\t\t\n\t\n\n","document":{"$oid":"60c22d9a7723bebd866478ae"},"refKey":77},
{"_key":"60c22d9a7723bebd866478b2","_id":"references/60c22d9a7723bebd866478b2","_rev":"_cfFk1GW---","tei":"\n\t\n\t\tEmpirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search\n\t\t\n\t\t\tAndrewKeller\n\t\t\n\t\t\n\t\t\tAlexeyINesvizhskii\n\t\t\n\t\t\n\t\t\tEugeneKolker\n\t\t\n\t\t\n\t\t\tRuediAebersold\n\t\t\n\t\t10.1021/ac025747h\n\t\t12403597\n\t\n\t\n\t\tAnalytical Chemistry\n\t\tAnal. Chem.\n\t\t0003-2700\n\t\t1520-6882\n\t\t\n\t\t\t74\n\t\t\t20\n\t\t\t\n\t\t\t\n\t\t\tAmerican Chemical Society (ACS)\n\t\t\n\t\n\n","document":{"$oid":"60c22d9a7723bebd866478ae"},"refKey":70},
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{"_key":"60c22eb97723bebd86647976","_id":"references/60c22eb97723bebd86647976","_rev":"_cfFk1IO---","tei":"\n\t\n\t\tAutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility\n\t\t\n\t\t\tGMMorris\n\t\t\n\t\t\n\t\t\tRHuey\n\t\t\n\t\t\n\t\t\tWLindstrom\n\t\t\n\t\t\n\t\t\tMFSanner\n\t\t\n\t\t\n\t\t\tRKBelew\n\t\t\n\t\t\n\t\t\tDSGoodsell\n\t\t\n\t\t\n\t\t\tAJOlson\n\t\t\n\t\n\t\n\t\tJ. Comput. Chem\n\t\t\n\t\t\t30\n\t\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22eb97723bebd86647973"},"refKey":66},
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{"_key":"60c22ee67723bebd86647a07","_id":"references/60c22ee67723bebd86647a07","_rev":"_cfFk1KK---","tei":"\n\t\n\t\tNonlinear optimization with GAMS/LGO\n\t\t\n\t\t\tDJános\n\t\t\n\t\t\n\t\t\tPintér\n\t\t\n\t\n\t\n\t\tJournal of Global Optimization\n\t\t\n\t\t\t\n\t\t\n\t\n\n","document":{"$oid":"60c22ee67723bebd86647a05"},"refKey":13},
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{"_key":"60c22fdb7723bebd86647ad8","_id":"references/60c22fdb7723bebd86647ad8","_rev":"_cfFk1La---","tei":"\n\t\n\t\tComprehensive diagnostics for respiratory virus infections after transplantation or after potential exposure to swine flu A/H1N1: what else is out there?\n\t\t\n\t\t\tADumoulin\n\t\t\n\t\t\n\t\t\tAF XWidmer\n\t\t\n\t\t\n\t\t\tHHHirsch\n\t\t\n\t\t10.1111/j.1399-3062.2009.00425.x\n\t\t19678903\n\t\tark:/67375/WNG-N84FTCTV-6\n\t\t18296A2DA85EFD93780E050F242DF79D5CBD6F16\n\t\n\t\n\t\tTransplant Infectious Disease\n\t\t1398-2273\n\t\t1399-3062\n\t\t\n\t\t\t11\n\t\t\t4\n\t\t\t\n\t\t\t\n\t\t\tWiley\n\t\t\n\t\n\n","document":{"$oid":"60c22fdb7723bebd86647ad7"},"refKey":8},
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{"_key":"60c231337723bebd86647c09","_id":"references/60c231337723bebd86647c09","_rev":"_cfFk1PK---","tei":"\n\t\n\t\tPosterior Summarization in Bayesian Phylogenetics Using Tracer 1.7\n\t\t\n\t\t\tAndrewRambaut\n\t\t\n\t\t\n\t\t\tAlexeiJDrummond\n\t\t\n\t\t\n\t\t\tDongXie\n\t\t\n\t\t\n\t\t\tGuyBaele\n\t\t\n\t\t\n\t\t\tMarcASuchard\n\t\t\n\t\t10.1093/sysbio/syy032\n\t\t29718447\n\t\tPMC6101584\n\t\t\n\t\t\n\t\n\t\n\t\tSystematic Biology\n\t\t1063-5157\n\t\t1076-836X\n\t\t\n\t\t\t67\n\t\t\t5\n\t\t\t\n\t\t\t\n\t\t\tOxford University Press (OUP)\n\t\t\n\t\n\n","document":{"$oid":"60c231337723bebd86647c07"},"refKey":16},
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