Journal article Open Access

DrugProt corpus relation annotation guidelines [ChemProt - Biocreative VI]

Rabal, Obdulia; López, Jose Antonio; Lagreid, Astrid; Krallinger, Martin

Annotation guidelines used for the construction of the annotations of chemical-protein interactions between Chemical Entities Mentions (CEMs) and Gene and Protein Related Objects (named as GPROs throughout this manuscript).

 

Introduction

The annotation guidelines have been refined after iterative cycles of annotations of sample documents. It also incorporated suggestions made by curators as well as observations of annotation inconsistencies encountered when comparing results from different human curators.

These guidelines provide curation rules to evaluate if a sentence within an abstract contains a description of a chemical-protein interaction; in particular, if sufficient detail/evidence is provided for co-mentioned CEMs and GPROs. Additionally, it describes curation rules and definitions to assign each identified CHEMPROT to any of the 5 classes and 16 subclasses predefined.

 

 

Please, cite: 
@inproceedings{krallinger2017overview, title={Overview of the BioCreative VI chemical-protein interaction Track}, author={Krallinger, Martin and Rabal, Obdulia and Akhondi, Saber A and P{\'e}rez, Mart{\i}n P{\'e}rez and Santamar{\'\i}a, Jes{\'u}s and Rodr{\'\i}guez, Gael P{\'e}rez and others}, booktitle={Proceedings of the sixth BioCreative challenge evaluation workshop}, volume={1}, pages={141--146},  year={2017}}

 

Related Resources:

Files (516.3 kB)
Name Size
CHEMPROT_guidelines_v6.pdf
md5:12ff90f1d241d0dc80fc77f8ce7c68ed
516.3 kB Download
306
254
views
downloads
All versions This version
Views 306306
Downloads 254254
Data volume 131.2 MB131.2 MB
Unique views 275275
Unique downloads 228228

Share

Cite as