Software Open Access

Sliding window peak calling script

Bischler, Thorsten; Förstner, Konrad U.; Dugar, Gaurav; Sharma, Cynthia M.


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{
  "description": "<p>This script was used in the study &quot;The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in <em>Campylobacter jejuni</em>&quot; for identification of CsrA binding sites based on RIP-seq data. The script is written in Python 3 and requires installation of the Python 3 packages <em>numpy</em> and <em>scipy</em> for execution.</p>", 
  "license": "https://opensource.org/licenses/ISC", 
  "creator": [
    {
      "affiliation": "University of W\u00fcrzburg, Research Center for Infectious Diseases, Josef-Schneider-Stra\u00dfe 2/D15, D-97080 W\u00fcrzburg, Germany", 
      "@type": "Person", 
      "name": "Bischler, Thorsten"
    }, 
    {
      "affiliation": "University of W\u00fcrzburg, Core Unit Systems Medicine, Josef-Schneider-Stra\u00dfe 2/D15, D-97080 W\u00fcrzburg, Germany", 
      "@type": "Person", 
      "name": "F\u00f6rstner, Konrad U."
    }, 
    {
      "affiliation": "University of W\u00fcrzburg, Research Center for Infectious Diseases, Josef-Schneider-Stra\u00dfe 2/D15, D-97080 W\u00fcrzburg, Germany", 
      "@type": "Person", 
      "name": "Dugar, Gaurav"
    }, 
    {
      "affiliation": "University of W\u00fcrzburg, Research Center for Infectious Diseases, Josef-Schneider-Stra\u00dfe 2/D15, D-97080 W\u00fcrzburg, Germany", 
      "@type": "Person", 
      "name": "Sharma, Cynthia M."
    }
  ], 
  "url": "https://zenodo.org/record/49292", 
  "datePublished": "2016-04-08", 
  "keywords": [
    "Peak calling", 
    "RIP-seq"
  ], 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.49292", 
  "@id": "https://doi.org/10.5281/zenodo.49292", 
  "@type": "SoftwareSourceCode", 
  "name": "Sliding window peak calling script"
}
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