Software Open Access

Sliding window peak calling script

Bischler, Thorsten; Förstner, Konrad U.; Dugar, Gaurav; Sharma, Cynthia M.


DataCite XML Export

<?xml version='1.0' encoding='utf-8'?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.49292</identifier>
  <creators>
    <creator>
      <creatorName>Bischler, Thorsten</creatorName>
      <givenName>Thorsten</givenName>
      <familyName>Bischler</familyName>
      <affiliation>University of Würzburg, Research Center for Infectious Diseases, Josef-Schneider-Straße 2/D15, D-97080 Würzburg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Förstner, Konrad U.</creatorName>
      <givenName>Konrad U.</givenName>
      <familyName>Förstner</familyName>
      <affiliation>University of Würzburg, Core Unit Systems Medicine, Josef-Schneider-Straße 2/D15, D-97080 Würzburg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Dugar, Gaurav</creatorName>
      <givenName>Gaurav</givenName>
      <familyName>Dugar</familyName>
      <affiliation>University of Würzburg, Research Center for Infectious Diseases, Josef-Schneider-Straße 2/D15, D-97080 Würzburg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Sharma, Cynthia M.</creatorName>
      <givenName>Cynthia M.</givenName>
      <familyName>Sharma</familyName>
      <affiliation>University of Würzburg, Research Center for Infectious Diseases, Josef-Schneider-Straße 2/D15, D-97080 Würzburg, Germany</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Sliding window peak calling script</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2016</publicationYear>
  <subjects>
    <subject>Peak calling</subject>
    <subject>RIP-seq</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2016-04-08</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/49292</alternateIdentifier>
  </alternateIdentifiers>
  <rightsList>
    <rights rightsURI="https://opensource.org/licenses/ISC">ISC License</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This script was used in the study &amp;quot;The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in &lt;em&gt;Campylobacter jejuni&lt;/em&gt;&amp;quot; for identification of CsrA binding sites based on RIP-seq data. The script is written in Python 3 and requires installation of the Python 3 packages &lt;em&gt;numpy&lt;/em&gt; and &lt;em&gt;scipy&lt;/em&gt; for execution.&lt;/p&gt;</description>
  </descriptions>
</resource>
240
37
views
downloads
All versions This version
Views 240240
Downloads 3737
Data volume 158.5 kB158.5 kB
Unique views 225225
Unique downloads 3737

Share

Cite as