Software Open Access

Sliding window peak calling script

Bischler, Thorsten; Förstner, Konrad U.; Dugar, Gaurav; Sharma, Cynthia M.


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    <dct:title>Sliding window peak calling script</dct:title>
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    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2016</dct:issued>
    <dcat:keyword>Peak calling</dcat:keyword>
    <dcat:keyword>RIP-seq</dcat:keyword>
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    <dct:description>&lt;p&gt;This script was used in the study &amp;quot;The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in &lt;em&gt;Campylobacter jejuni&lt;/em&gt;&amp;quot; for identification of CsrA binding sites based on RIP-seq data. The script is written in Python 3 and requires installation of the Python 3 packages &lt;em&gt;numpy&lt;/em&gt; and &lt;em&gt;scipy&lt;/em&gt; for execution.&lt;/p&gt;</dct:description>
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