4898765
doi
10.5281/zenodo.4898765
oai:zenodo.org:4898765
Alexander Peltzer
Boehringer Ingelheim
Thiseas C. Lamnidis
Max Planck Institute for the Science of Human History
Maxime Borry
Max Planck institute for the Science of Human Evolution
ZandraFagernas
Ido Bar
Griffith University
Aida Andrades Valtueña
Max Planck Institute for the Science of Human History
alexandregilardet
The Francis Crick Institute
nf-core bot
Maxime U. Garcia
@SciLifeLab | Karolinska Institutet
Evan Floden
Seqera Labs and @nextflow-io
Phil Ewels
Science for Life Laboratory
Patrick Hüther
Charles Plessy
Gisela Gabernet
@qbicsoftware
sc13-bioinf
Åshild J. Vågene
Harshil Patel
The Francis Crick Institute
Olga Botvinnik
@czbiohub
Selina Carlhoff
MPI-SHH
Alex Hübner
nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04
James A. Fellows Yates
LMU München
url:https://github.com/nf-core/eager/tree/2.3.5
info:eu-repo/semantics/openAccess
Other (Open)
<code>Added</code>
<ul>
<li><a href="https://github.com/nf-core/eager/issues/722">#722</a> - Adds bwa <code>-o</code> flag for more flexibility in bwa parameters</li>
<li><a href="https://github.com/nf-core/eager/issues/736">#736</a> - Add printing of multiqc run report location on successful completion</li>
<li>New logo that is more visible when a user is using darkmode on GitHub or nf-core website!</li>
</ul>
<code>Fixed</code>
<ul>
<li><a href="https://github.com/nf-core/eager/issues/723">#723</a> - Fixes empty fields in TSV resulting in uninformative error</li>
<li>Updated template to nf-core/tools 1.14</li>
<li><a href="https://github.com/nf-core/eager/issues/688">#688</a> - Clarified the pipeline is not just for humans and microbes, but also plants and animals, and also for modern DNA</li>
<li><a href="https://github.com/nf-core/eager/pull/751">#751</a> - Added missing label to mtnucratio</li>
<li>General code cleanup and standardisation of parameters with no default setting</li>
<li><a href="https://github.com/nf-core/eager/issues/750">#750</a> - Fixed piped commands requesting the same number of CPUs at each command step</li>
<li><a href="https://github.com/nf-core/eager/issues/757">#757</a> - Removed confusing 'Data Type' variable from MultiQC workflow summary (not consistent with TSV input)</li>
<li><a href="https://github.com/nf-core/eager/pull/759">#759</a> - Fixed malformed software scraping regex that resulted in N/A in MultiQC report</li>
<li><a href="https://github.com/nf-core/eager/pull/759">#761</a> - Fixed issues related to instability of samtools filtering related CI tests</li>
</ul>
<code>Dependencies</code>
<code>Deprecated</code>
Zenodo
2021-06-04
info:eu-repo/semantics/other
1465061
2.3.5
1684257406.96722
17774325
md5:8c6ccc1af944ee0bd4b805fb1c21c73b
https://zenodo.org/records/4898765/files/nf-core/eager-2.3.5.zip
public
https://github.com/nf-core/eager/tree/2.3.5
Is supplement to
url
10.5281/zenodo.1465061
isVersionOf
doi