James A. Fellows Yates
Alexander Peltzer
Thiseas C. Lamnidis
Maxime Borry
ZandraFagernas
Ido Bar
Aida Andrades Valtueña
alexandregilardet
nf-core bot
Maxime U. Garcia
Evan Floden
Phil Ewels
Patrick Hüther
Charles Plessy
Gisela Gabernet
sc13-bioinf
Åshild J. Vågene
Harshil Patel
Olga Botvinnik
Selina Carlhoff
Alex Hübner
2021-06-04
<code>Added</code>
<ul>
<li><a href="https://github.com/nf-core/eager/issues/722">#722</a> - Adds bwa <code>-o</code> flag for more flexibility in bwa parameters</li>
<li><a href="https://github.com/nf-core/eager/issues/736">#736</a> - Add printing of multiqc run report location on successful completion</li>
<li>New logo that is more visible when a user is using darkmode on GitHub or nf-core website!</li>
</ul>
<code>Fixed</code>
<ul>
<li><a href="https://github.com/nf-core/eager/issues/723">#723</a> - Fixes empty fields in TSV resulting in uninformative error</li>
<li>Updated template to nf-core/tools 1.14</li>
<li><a href="https://github.com/nf-core/eager/issues/688">#688</a> - Clarified the pipeline is not just for humans and microbes, but also plants and animals, and also for modern DNA</li>
<li><a href="https://github.com/nf-core/eager/pull/751">#751</a> - Added missing label to mtnucratio</li>
<li>General code cleanup and standardisation of parameters with no default setting</li>
<li><a href="https://github.com/nf-core/eager/issues/750">#750</a> - Fixed piped commands requesting the same number of CPUs at each command step</li>
<li><a href="https://github.com/nf-core/eager/issues/757">#757</a> - Removed confusing 'Data Type' variable from MultiQC workflow summary (not consistent with TSV input)</li>
<li><a href="https://github.com/nf-core/eager/pull/759">#759</a> - Fixed malformed software scraping regex that resulted in N/A in MultiQC report</li>
<li><a href="https://github.com/nf-core/eager/pull/759">#761</a> - Fixed issues related to instability of samtools filtering related CI tests</li>
</ul>
<code>Dependencies</code>
<code>Deprecated</code>
https://doi.org/10.5281/zenodo.4898765
oai:zenodo.org:4898765
Zenodo
https://github.com/nf-core/eager/tree/2.3.5
https://doi.org/10.5281/zenodo.1465061
info:eu-repo/semantics/openAccess
Other (Open)
nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04
info:eu-repo/semantics/other