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nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04

James A. Fellows Yates; Alexander Peltzer; Thiseas C. Lamnidis; Maxime Borry; ZandraFagernas; Ido Bar; Aida Andrades Valtueña; alexandregilardet; nf-core bot; Maxime U. Garcia; Evan Floden; Phil Ewels; Patrick Hüther; Charles Plessy; Gisela Gabernet; sc13-bioinf; Åshild J. Vågene; Harshil Patel; Olga Botvinnik; Selina Carlhoff; Alex Hübner

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  <dc:creator>James A. Fellows Yates</dc:creator>
  <dc:creator>Alexander Peltzer</dc:creator>
  <dc:creator>Thiseas C. Lamnidis</dc:creator>
  <dc:creator>Maxime Borry</dc:creator>
  <dc:creator>Ido Bar</dc:creator>
  <dc:creator>Aida Andrades Valtueña</dc:creator>
  <dc:creator>nf-core bot</dc:creator>
  <dc:creator>Maxime U. Garcia</dc:creator>
  <dc:creator>Evan Floden</dc:creator>
  <dc:creator>Phil Ewels</dc:creator>
  <dc:creator>Patrick Hüther</dc:creator>
  <dc:creator>Charles Plessy</dc:creator>
  <dc:creator>Gisela Gabernet</dc:creator>
  <dc:creator>Åshild J. Vågene</dc:creator>
  <dc:creator>Harshil Patel</dc:creator>
  <dc:creator>Olga Botvinnik</dc:creator>
  <dc:creator>Selina Carlhoff</dc:creator>
  <dc:creator>Alex Hübner</dc:creator>

#722 - Adds bwa -o flag for more flexibility in bwa parameters
#736 - Add printing of multiqc run report location on successful completion
New logo that is more visible when a user is using darkmode on GitHub or nf-core website!


#723 - Fixes empty fields in TSV resulting in uninformative error
Updated template to nf-core/tools 1.14
#688 - Clarified the pipeline is not just for humans and microbes, but also plants and animals, and also for modern DNA
#751 - Added missing label to mtnucratio
General code cleanup and standardisation of parameters with no default setting
#750 - Fixed piped commands requesting the same number of CPUs at each command step
#757 - Removed confusing 'Data Type' variable from MultiQC workflow summary (not consistent with TSV input)
#759 - Fixed malformed software scraping regex that resulted in N/A in MultiQC report
#761 - Fixed issues related to instability of samtools filtering related CI tests

  <dc:title>nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04</dc:title>
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