10.5281/zenodo.4898765
https://zenodo.org/records/4898765
oai:zenodo.org:4898765
James A. Fellows Yates
James A. Fellows Yates
LMU München
Alexander Peltzer
Alexander Peltzer
Boehringer Ingelheim
Thiseas C. Lamnidis
Thiseas C. Lamnidis
Max Planck Institute for the Science of Human History
Maxime Borry
Maxime Borry
Max Planck institute for the Science of Human Evolution
ZandraFagernas
ZandraFagernas
Ido Bar
Ido Bar
Griffith University
Aida Andrades Valtueña
Aida Andrades Valtueña
Max Planck Institute for the Science of Human History
alexandregilardet
alexandregilardet
The Francis Crick Institute
nf-core bot
nf-core bot
Maxime U. Garcia
Maxime U. Garcia
@SciLifeLab | Karolinska Institutet
Evan Floden
Evan Floden
Seqera Labs and @nextflow-io
Phil Ewels
Phil Ewels
Science for Life Laboratory
Patrick Hüther
Patrick Hüther
Charles Plessy
Charles Plessy
Gisela Gabernet
Gisela Gabernet
@qbicsoftware
sc13-bioinf
sc13-bioinf
Åshild J. Vågene
Åshild J. Vågene
Harshil Patel
Harshil Patel
The Francis Crick Institute
Olga Botvinnik
Olga Botvinnik
@czbiohub
Selina Carlhoff
Selina Carlhoff
MPI-SHH
Alex Hübner
Alex Hübner
nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04
Zenodo
2021
2021-06-04
https://github.com/nf-core/eager/tree/2.3.5
10.5281/zenodo.1465061
2.3.5
Other (Open)
Added
#722 - Adds bwa -o flag for more flexibility in bwa parameters
#736 - Add printing of multiqc run report location on successful completion
New logo that is more visible when a user is using darkmode on GitHub or nf-core website!
Fixed
#723 - Fixes empty fields in TSV resulting in uninformative error
Updated template to nf-core/tools 1.14
#688 - Clarified the pipeline is not just for humans and microbes, but also plants and animals, and also for modern DNA
#751 - Added missing label to mtnucratio
General code cleanup and standardisation of parameters with no default setting
#750 - Fixed piped commands requesting the same number of CPUs at each command step
#757 - Removed confusing 'Data Type' variable from MultiQC workflow summary (not consistent with TSV input)
#759 - Fixed malformed software scraping regex that resulted in N/A in MultiQC report
#761 - Fixed issues related to instability of samtools filtering related CI tests
Dependencies
Deprecated