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nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04

James A. Fellows Yates; Alexander Peltzer; Thiseas C. Lamnidis; Maxime Borry; ZandraFagernas; Ido Bar; Aida Andrades Valtueña; alexandregilardet; nf-core bot; Maxime U. Garcia; Evan Floden; Phil Ewels; Patrick Hüther; Charles Plessy; Gisela Gabernet; sc13-bioinf; Åshild J. Vågene; Harshil Patel; Olga Botvinnik; Selina Carlhoff; Alex Hübner


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.4898765", 
  "title": "nf-core/eager: [2.3.5] - Aalen (Patch) - 2021-06-04", 
  "issued": {
    "date-parts": [
      [
        2021, 
        6, 
        4
      ]
    ]
  }, 
  "abstract": "<code>Added</code>\n<ul>\n<li><a href=\"https://github.com/nf-core/eager/issues/722\">#722</a> - Adds bwa <code>-o</code> flag for more flexibility in bwa parameters</li>\n<li><a href=\"https://github.com/nf-core/eager/issues/736\">#736</a> - Add printing of multiqc run report location on successful completion</li>\n<li>New logo that is more visible when a user is using darkmode on GitHub or nf-core website!</li>\n</ul>\n<code>Fixed</code>\n<ul>\n<li><a href=\"https://github.com/nf-core/eager/issues/723\">#723</a> - Fixes empty fields in TSV resulting in uninformative error</li>\n<li>Updated template to nf-core/tools 1.14</li>\n<li><a href=\"https://github.com/nf-core/eager/issues/688\">#688</a> - Clarified the pipeline is not just for humans and microbes, but also plants and animals, and also for modern DNA</li>\n<li><a href=\"https://github.com/nf-core/eager/pull/751\">#751</a> - Added missing label to mtnucratio</li>\n<li>General code cleanup and standardisation of parameters with no default setting</li>\n<li><a href=\"https://github.com/nf-core/eager/issues/750\">#750</a> - Fixed piped commands requesting the same number of CPUs at each command step</li>\n<li><a href=\"https://github.com/nf-core/eager/issues/757\">#757</a> - Removed confusing 'Data Type' variable from MultiQC workflow summary (not consistent with TSV input)</li>\n<li><a href=\"https://github.com/nf-core/eager/pull/759\">#759</a> - Fixed malformed software scraping regex that resulted in N/A in MultiQC report</li>\n<li><a href=\"https://github.com/nf-core/eager/pull/759\">#761</a> - Fixed issues related to instability of samtools filtering related CI tests</li>\n</ul>\n<code>Dependencies</code>\n<code>Deprecated</code>", 
  "author": [
    {
      "family": "James A. Fellows Yates"
    }, 
    {
      "family": "Alexander Peltzer"
    }, 
    {
      "family": "Thiseas C. Lamnidis"
    }, 
    {
      "family": "Maxime Borry"
    }, 
    {
      "family": "ZandraFagernas"
    }, 
    {
      "family": "Ido Bar"
    }, 
    {
      "family": "Aida Andrades Valtue\u00f1a"
    }, 
    {
      "family": "alexandregilardet"
    }, 
    {
      "family": "nf-core bot"
    }, 
    {
      "family": "Maxime U. Garcia"
    }, 
    {
      "family": "Evan Floden"
    }, 
    {
      "family": "Phil Ewels"
    }, 
    {
      "family": "Patrick H\u00fcther"
    }, 
    {
      "family": "Charles Plessy"
    }, 
    {
      "family": "Gisela Gabernet"
    }, 
    {
      "family": "sc13-bioinf"
    }, 
    {
      "family": "\u00c5shild J. V\u00e5gene"
    }, 
    {
      "family": "Harshil Patel"
    }, 
    {
      "family": "Olga Botvinnik"
    }, 
    {
      "family": "Selina Carlhoff"
    }, 
    {
      "family": "Alex H\u00fcbner"
    }
  ], 
  "version": "2.3.5", 
  "type": "article", 
  "id": "4898765"
}
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