Software Open Access
Daniel S. Himmelstein; Alexander R. Pico
<?xml version='1.0' encoding='UTF-8'?> <record xmlns="http://www.loc.gov/MARC21/slim"> <leader>00000nmm##2200000uu#4500</leader> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">pathways</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">gene set</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">WikiPathways</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Reactome</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">PID</subfield> </datafield> <datafield tag="653" ind1=" " ind2=" "> <subfield code="a">Rephetio</subfield> </datafield> <controlfield tag="005">20200125072633.0</controlfield> <controlfield tag="001">48810</controlfield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="a">Alexander R. Pico</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">922632</subfield> <subfield code="z">md5:c794a81852c79e075eaf96056d1b9d64</subfield> <subfield code="u">https://zenodo.org/record/48810/files/pathways-v2.0.zip</subfield> </datafield> <datafield tag="542" ind1=" " ind2=" "> <subfield code="l">open</subfield> </datafield> <datafield tag="260" ind1=" " ind2=" "> <subfield code="c">2016-04-02</subfield> </datafield> <datafield tag="909" ind1="C" ind2="O"> <subfield code="p">software</subfield> <subfield code="o">oai:zenodo.org:48810</subfield> </datafield> <datafield tag="100" ind1=" " ind2=" "> <subfield code="a">Daniel S. Himmelstein</subfield> </datafield> <datafield tag="245" ind1=" " ind2=" "> <subfield code="a">dhimmel/pathways v2.0: Compiling human pathway gene sets</subfield> </datafield> <datafield tag="540" ind1=" " ind2=" "> <subfield code="a">Other (Open)</subfield> </datafield> <datafield tag="650" ind1="1" ind2="7"> <subfield code="a">cc-by</subfield> <subfield code="2">opendefinition.org</subfield> </datafield> <datafield tag="520" ind1=" " ind2=" "> <subfield code="a"><p>This release compiles 1,862 pathway gene sets (1,341 from Reactome, 298 from WikiPathways, and 223 from the PID). Reactome and the PID were retrieved via Pathway Commons v7. Compared to the previous release (dhimmel/pathways v1.1), this release removes MSigDB pathways due to licensing issues.</p></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">url</subfield> <subfield code="i">isSupplementTo</subfield> <subfield code="a">https://github.com/dhimmel/pathways/tree/v2.0</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">isVersionOf</subfield> <subfield code="a">10.5281/zenodo.593860</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.48810</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">software</subfield> </datafield> </record>
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