April 2, 2016 Software Open Access

Daniel S. Himmelstein; Alexander R. Pico

DataCite XML Export

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  <identifier identifierType="DOI">10.5281/zenodo.48810</identifier>
  <creators>
    <creator>
      <creatorName>Daniel S. Himmelstein</creatorName>
    </creator>
    <creator>
      <creatorName>Alexander R. Pico</creatorName>
    </creator>
  </creators>
  <titles>
    <title>dhimmel/pathways v2.0: Compiling human pathway gene sets</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2016</publicationYear>
  <subjects>
    <subject>pathways</subject>
    <subject>gene set</subject>
    <subject>WikiPathways</subject>
    <subject>Reactome</subject>
    <subject>PID</subject>
    <subject>Rephetio</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2016-04-02</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/48810</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/dhimmel/pathways/tree/v2.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.593860</relatedIdentifier>
  </relatedIdentifiers>
  <version>v2.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This release compiles 1,862 pathway gene sets (1,341 from Reactome, 298 from WikiPathways, and 223 from the PID). Reactome and the PID were retrieved via Pathway Commons v7. Compared to the previous release (dhimmel/pathways v1.1), this release removes MSigDB pathways due to licensing issues.&lt;/p&gt;</description>
  </descriptions>
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