Dataset Open Access

EUNIS-ESy: Expert system for automatic classification of European vegetation plots to EUNIS habitats

Chytrý, Milan; Tichý, Lubomír; Hennekens, Stephan M.; Knollová, Ilona; Janssen, John A. M.; Rodwell, John S.; Peterka, Tomáš; Marcenò, Corrado; Landucci, Flavia; Danihelka, Jiří; Hájek, Michal; Dengler, Jürgen; Novák, Pavel; Zukal, Dominik; Jiménez-Alfaro, Borja; Mucina, Ladislav; Abdulhak, Sylvain; Abramova, Larisa; Aćić, Svetlana; Agrillo, Emiliano; Attorre, Fabio; Bergmeier, Erwin; Biurrun, Idoia; Boch, Steffen; Bölöni, János; Bonari, Gianmaria; Braslavskaya, Tatiana; Bruelheide, Helge; Bruzzaniti, Vanessa; Campos, Juan Antonio; Čarni, Andraž; Casella, Laura; Chiarucci, Alessandro; Ćuk, Mirjana; Ćušterevska, Renata; De Bie, Els; Delbosc, Pauline; Demina, Olga; Didukh, Yakiv; Dítě, Daniel; Dziuba, Tetiana; Ewald, Jörg; Gavilán, Rosario G.; Gégout, Jean-Claude; Giusso del Galdo, Gian Pietro; Golovanov, Yaroslav; Golub, Valentin; Goncharova, Nadezhda; Goral, Friedemann; Graf, Ulrich; Indreica, Adrian; Isermann, Maike; Jandt, Ute; Jansen, Florian; Jansen, Jan; Jašková, Anni; Jiroušek, Martin; Kącki, Zygmunt; Kalníková, Veronika; Kavgacı, Ali; Khanina, Larisa; Korolyuk, Andrey Yu.; Kozhevnikova, Mariya; Kuzemko, Anna; Küzmič, Filip; Kuznetsov, Oleg L.; Laiviņš, Māris; Lavrinenko, Igor; Lavrinenko, Olga; Lebedeva, Maria; Lososová, Zdeňka; Lysenko, Tatiana; Maciejewski, Lise; Mardari, Constantin; Marinšek, Aleksander; Mitchell, Ruth; Napreenko, Maxim G.; Onyshchenko, Viktor; Pakeman, Robin; Pérez-Haase, Aaron; Pielech, Remigiusz; Prokhorov, Vadim; Rašomavičius, Valerijus; Rodríguez Rojo, Maria Pilar; Rūsiņa, Solvita; Schrautzer, Joachim; Šibík, Jozef; Šilc, Urban; Škvorc, Željko; Smagin, Viktor A.; Stančić, Zvjezdana; Stanisci, Angela; Tikhonova, Elena; Tonteri, Tiina; Tsvirko, Ruslan; Uogintas, Domas; Valachovič, Milan; Vassilev, Kiril; Vynokurov, Denys; Willner, Wolfgang; Yamalov, Sergey; Evans, Douglas; Palitzsch Lund, Mette; Spyropoulou, Rania; Tryfon, Eleni; Schaminée, Joop H. J.


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    "description": "<p><strong>EUNIS-ESy</strong> is an expert system for automatic classification of European vegetation plots to habitat types of the EUNIS Habitat Classification. The EUNIS classification and the principles of the expert system are described by <a href=\"https://doi.org/10.1111/avsc.12519\">Chytr&yacute; et al. (2020)</a>. The classification of a set of vegetation plots can be run using the&nbsp;JUICE program (<a href=\"https://doi.org/10.1111/j.1654-1103.2002.tb02069.x\">Tich&yacute; 2002</a>; <a href=\"https://www.sci.muni.cz/botany/juice/\">https://www.sci.muni.cz/botany/juice/</a>), TURBOVEG 3 program (Hennekens 2015) and an R script (<a href=\"https://doi.org/10.1111/avsc.12562\">Bruelheide et al. 2021</a>).</p>\n\n<p>This dataset contains two parts: (1) the expert system and related files necessary for running it; (2) characterization of EUNIS habitats based on the results of the expert system classification.</p>\n\n<p><strong>1. Expert system and related files necessary to run it</strong></p>\n\n<p>1.1. <strong>EUNIS-ESy-2021-06-01.txt </strong>&ndash; a file containing the script for the classification of vegetation plots by EUNIS-ESy. This version contains tested definitions for the revised classification vegetated Marine (coastal saltmarshes), Coastal, Wetland, Grassland, Shrubland, Forest, Inland sparsely vegetated and Man-made habitats, and preliminary non-tested definitions of the older classification of Marine, Aquatic and Inland sparsely vegetated habitats.</p>\n\n<p>1.2.&nbsp;<strong>Nomenclature-translation-from-Turboveg-2-databases.zip </strong>&ndash; an archive containing the scripts for automatic translation of taxon concepts and names used in individual European Turboveg 2 databases (<a href=\"https://doi.org/10.2307/3237010\">Hennekens &amp; Schamin&eacute;e 2001</a>;&nbsp;<a href=\"https://www.synbiosys.alterra.nl/turboveg/\">https://www.synbiosys.alterra.nl/turboveg/</a>) to the nomenclature that can be used as an input for EUNIS-ESy.</p>\n\n<p>1.3. <strong>EUNIS-ESy-User-Guide.pdf </strong>&ndash; a brief user guide to the classification of vegetation plots by EUNIS-ESy using the JUICE program. Please read this guide carefully before running the expert system to avoid misclassifications.</p>\n\n<p><strong>2. Characterization of the EUNIS habitats based on the results of the EUNIS-ESy classification</strong></p>\n\n<p>2.1. <strong>EUNIS-habitats-2021-06-01.xlsx&nbsp;</strong>&ndash; the current list of EUNIS habitats.</p>\n\n<p>2.2. <strong>Habitat-factsheets-EUNIS-habitats-2021-06-01.pdf </strong>&ndash; a summary of data on EUNIS vegetated Marine (coastal saltmarshes), Coastal, Wetland, Grassland, Shrubland, Forest, Inland sparsely vegetated and Man-made habitats. These data were extracted from vegetation plots from the European Vegetation Archive (EVA; <a href=\"https://doi.org/10.1111/avsc.12191\">Chytr&yacute; et al. 2016</a>; <a href=\"http://euroveg.org/eva-database\">http://euroveg.org/eva-database</a>) and other databases classified by EUNIS-ESy v2021-06-01. Each habitat is described in a factsheet&nbsp;that includes a brief habitat description, distribution map, corresponding alliances of EuroVegChecklist (<a href=\"http://doi.org/10.1111/avsc.12257\">Mucina et al. 2016</a>; <a href=\"https://www.synbiosys.alterra.nl/evc/\">https://www.synbiosys.alterra.nl/evc/</a>) and characteristic species combination divided into diagnostic, constant and dominant species.</p>\n\n<p>2.3. <strong>Characteristic-species-combinations-EUNIS-habitats-2021-06-01.xlsx </strong>&ndash;&nbsp;a database of habitats&#39; characteristic species combinations in a spreadsheet format.</p>\n\n<p>2.4. <strong>Data-sources-EUNIS-classification-2021-06-01.pdf </strong>&ndash; a list of data sources used to produce the distribution maps and characteristic species combinations.</p>\n\n<p>-----------------------------------------------------------------------------------------------------</p>\n\n<p><strong>Differences from the previous version (2020-06-08)</strong></p>\n\n<p>Vegetated Marine (coastal saltmarshes) and Inland sparsely vegetation habitats were added to the expert system. New vegetation-plot records added to the EVA database by 7 April 2021 were used to characterize habitat types.</p>\n\n<p>-----------------------------------------------------------------------------------------------------</p>\n\n<p><strong>Recommended citation of this version of the EUNIS-ESy expert system</strong></p>\n\n<p>Chytr&yacute; et al. (2020), version 2021-06-01</p>\n\n<p>Chytr&yacute; M., Tich&yacute; L., Hennekens S.M., Knollov&aacute; I., Janssen J.A.M., Rodwell J.S., Peterka T., Marcen&ograve; C., Landucci F., Danihelka J., H&aacute;jek M., Dengler J., Nov&aacute;k P., Zukal D., Jim&eacute;nez-Alfaro B., Mucina L., Abdulhak S., A\u0107i\u0107 S., Agrillo E., Attorre F., Bergmeier E., Biurrun I., Boch S., B&ouml;l&ouml;ni J., Bonari G., Braslavskaya T., Bruelheide H., Campos J.A., \u010carni A., Casella L., \u0106uk M., \u0106u&scaron;terevska R., De Bie E., Delbosc P., Demina O., Didukh Y., D&iacute;t\u011b D., Dziuba T., Ewald J., Gavil&aacute;n R.G., G&eacute;gout J.-C., Giusso del Galdo G.P., Golub V., Goncharova N., Goral F., Graf U., Indreica A., Isermann M., Jandt U., Jansen F., Jansen J., Ja&scaron;kov&aacute; A., Jirou&scaron;ek M., K\u0105cki Z., Kaln&iacute;kov&aacute; V., Kavgac\u0131 A., Khanina L., Korolyuk A.Yu., Kozhevnikova M., Kuzemko A., K&uuml;zmi\u010d F., Kuznetsov O.L., Laivi\u0146&scaron; M., Lavrinenko I., Lavrinenko O., Lebedeva M., Lososov&aacute; Z., Lysenko T., Maciejewski L., Mardari C., Marin&scaron;ek A., Napreenko M.G., Onyshchenko V., P&eacute;rez-Haase A., Pielech R., Prokhorov V., Ra&scaron;omavi\u010dius V., Rodr&iacute;guez Rojo M.P., R\u016bsi\u0146a S., Schrautzer J., &Scaron;ib&iacute;k J., &Scaron;ilc U., &Scaron;kvorc \u017d., Smagin V.A., Stan\u010di\u0107 Z., Stanisci A., Tikhonova E., Tonteri T., Uogintas D., Valachovi\u010d M., Vassilev K., Vynokurov D., Willner W., Yamalov S., Evans D., Palitzsch Lund M., Spyropoulou R., Tryfon E. &amp;amp; Schamin&eacute;e J.H.J. (2020) EUNIS Habitat Classification: expert system, characteristic species combinations and distribution maps of European habitats. Applied Vegetation Science, 23, 648&ndash;675. https://doi.org/10.1111/avsc.12519</p>", 
    "language": "eng", 
    "title": "EUNIS-ESy: Expert system for automatic classification of European vegetation plots to EUNIS habitats", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "notes": "The preparation of this version of the dataset was supported through the 2019-2020 BiodivERsA joint call for research proposals, under the BiodivClim ERA-Net COFUND program, and with the funding organisations Swiss National Science Foundation SNF (project: FeedBaCks, 193907), Agence nationale de la recherche (ANR-20-EBI5-0001-05), the Swedish Research Council for Sustainable Development (Formas 2020-02360), the German Research Foundation (DFG BR 1698/21-1, DFG HI 1538/16-1), and the Technology Agency of the Czech Republic (SS70010002).", 
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    "version": "v2021-06-01", 
    "references": [
      "Chytr\u00fd M., Tich\u00fd L., Hennekens S.M., Knollov\u00e1 I., Janssen J.A.M., Rodwell J.S., Peterka T., Marcen\u00f2 C., Landucci F., Danihelka J., H\u00e1jek M., Dengler J., Nov\u00e1k P., Zukal D., Jim\u00e9nez-Alfaro B., Mucina L., Abdulhak S., A\u0107i\u0107 S., Agrillo E., Attorre F., Bergmeier E., Biurrun I., Boch S., B\u00f6l\u00f6ni J., Bonari G., Braslavskaya T., Bruelheide H., Campos J.A., \u010carni A., Casella L., \u0106uk M., \u0106u\u0161terevska R., De Bie E., Delbosc P., Demina O., Didukh Y., D\u00edt\u011b D., Dziuba T., Ewald J., Gavil\u00e1n R.G., G\u00e9gout J.-C., Giusso del Galdo G.P., Golub V., Goncharova N., Goral F., Graf U., Indreica A., Isermann M., Jandt U., Jansen F., Jansen J., Ja\u0161kov\u00e1 A., Jirou\u0161ek M., K\u0105cki Z., Kaln\u00edkov\u00e1 V., Kavgac\u0131 A., Khanina L., Korolyuk A.Yu., Kozhevnikova M., Kuzemko A., K\u00fczmi\u010d F., Kuznetsov O.L., Laivi\u0146\u0161 M., Lavrinenko I., Lavrinenko O., Lebedeva M., Lososov\u00e1 Z., Lysenko T., Maciejewski L., Mardari C., Marin\u0161ek A., Napreenko M.G., Onyshchenko V., P\u00e9rez-Haase A., Pielech R., Prokhorov V., Ra\u0161omavi\u010dius V., Rodr\u00edguez Rojo M.P., R\u016bsi\u0146a S., Schrautzer J., \u0160ib\u00edk J., \u0160ilc U., \u0160kvorc \u017d., Smagin V.A., Stan\u010di\u0107 Z., Stanisci A., Tikhonova E., Tonteri T., Uogintas D., Valachovi\u010d M., Vassilev K., Vynokurov D., Willner W., Yamalov S., Evans D., Palitzsch Lund M., Spyropoulou R., Tryfon E. & Schamin\u00e9e J.H.J. (2021) EUNIS Habitat Classification: expert system, characteristic species combinations and distribution maps of European habitats. Applied Vegetation Science, 23, 648\u2013675. https://doi.org/10.1111/avsc.12519"
    ], 
    "keywords": [
      "Coastal habitat", 
      "Diagnostic species", 
      "Distribution map", 
      "Dune vegetation", 
      "European Nature Information System (EUNIS)", 
      "Europe", 
      "European Vegetation Archive (EVA)", 
      "Expert system", 
      "Forest", 
      "Grassland", 
      "Habitat Classification", 
      "Inland sparsely vegetated habitat", 
      "Man-made habitat", 
      "Marine habitat", 
      "Scrub", 
      "Vegetation database", 
      "Vegetation plot", 
      "Wetland"
    ], 
    "publication_date": "2021-06-01", 
    "creators": [
      {
        "orcid": "0000-0002-8122-3075", 
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Chytr\u00fd, Milan"
      }, 
      {
        "orcid": "0000-0001-8400-7741", 
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Tich\u00fd, Lubom\u00edr"
      }, 
      {
        "orcid": "0000-0003-1221-0323", 
        "affiliation": "Wageningen Environmental Research, The Netherlands", 
        "name": "Hennekens, Stephan M."
      }, 
      {
        "orcid": "0000-0003-4074-789X", 
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Knollov\u00e1, Ilona"
      }, 
      {
        "affiliation": "Wageningen Environmental Research, The Netherlandsch", 
        "name": "Janssen, John A. M."
      }, 
      {
        "affiliation": "Independent Consultant, Lancaster, UK", 
        "name": "Rodwell, John S."
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Peterka, Tom\u00e1\u0161"
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Marcen\u00f2, Corrado"
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Landucci, Flavia"
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Danihelka, Ji\u0159\u00ed"
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "H\u00e1jek, Michal"
      }, 
      {
        "affiliation": "Zurich University of Applied Sciences (ZHAW), W\u00e4denswil, Switzerland", 
        "name": "Dengler, J\u00fcrgen"
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Nov\u00e1k, Pavel"
      }, 
      {
        "affiliation": "Masaryk University, Brno, Czech Republic", 
        "name": "Zukal, Dominik"
      }, 
      {
        "affiliation": "Oviedo University, Spain", 
        "name": "Jim\u00e9nez-Alfaro, Borja"
      }, 
      {
        "affiliation": "Murdoch University, Perth, Australia", 
        "name": "Mucina, Ladislav"
      }, 
      {
        "name": "Abdulhak, Sylvain"
      }, 
      {
        "name": "Abramova, Larisa"
      }, 
      {
        "name": "A\u0107i\u0107, Svetlana"
      }, 
      {
        "name": "Agrillo, Emiliano"
      }, 
      {
        "name": "Attorre, Fabio"
      }, 
      {
        "name": "Bergmeier, Erwin"
      }, 
      {
        "name": "Biurrun, Idoia"
      }, 
      {
        "name": "Boch, Steffen"
      }, 
      {
        "name": "B\u00f6l\u00f6ni, J\u00e1nos"
      }, 
      {
        "name": "Bonari, Gianmaria"
      }, 
      {
        "name": "Braslavskaya, Tatiana"
      }, 
      {
        "name": "Bruelheide, Helge"
      }, 
      {
        "name": "Bruzzaniti, Vanessa"
      }, 
      {
        "name": "Campos, Juan Antonio"
      }, 
      {
        "name": "\u010carni, Andra\u017e"
      }, 
      {
        "name": "Casella, Laura"
      }, 
      {
        "name": "Chiarucci, Alessandro"
      }, 
      {
        "name": "\u0106uk, Mirjana"
      }, 
      {
        "name": "\u0106u\u0161terevska, Renata"
      }, 
      {
        "name": "De Bie, Els"
      }, 
      {
        "name": "Delbosc, Pauline"
      }, 
      {
        "name": "Demina, Olga"
      }, 
      {
        "name": "Didukh, Yakiv"
      }, 
      {
        "name": "D\u00edt\u011b, Daniel"
      }, 
      {
        "name": "Dziuba, Tetiana"
      }, 
      {
        "name": "Ewald, J\u00f6rg"
      }, 
      {
        "name": "Gavil\u00e1n, Rosario G."
      }, 
      {
        "name": "G\u00e9gout, Jean-Claude"
      }, 
      {
        "name": "Giusso del Galdo, Gian Pietro"
      }, 
      {
        "name": "Golovanov, Yaroslav"
      }, 
      {
        "name": "Golub, Valentin"
      }, 
      {
        "name": "Goncharova, Nadezhda"
      }, 
      {
        "name": "Goral, Friedemann"
      }, 
      {
        "name": "Graf, Ulrich"
      }, 
      {
        "name": "Indreica, Adrian"
      }, 
      {
        "name": "Isermann, Maike"
      }, 
      {
        "name": "Jandt, Ute"
      }, 
      {
        "name": "Jansen, Florian"
      }, 
      {
        "name": "Jansen, Jan"
      }, 
      {
        "name": "Ja\u0161kov\u00e1, Anni"
      }, 
      {
        "name": "Jirou\u0161ek, Martin"
      }, 
      {
        "name": "K\u0105cki, Zygmunt"
      }, 
      {
        "name": "Kaln\u00edkov\u00e1, Veronika"
      }, 
      {
        "name": "Kavgac\u0131, Ali"
      }, 
      {
        "name": "Khanina, Larisa"
      }, 
      {
        "name": "Korolyuk, Andrey Yu."
      }, 
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