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Syllogist, a reference-based algorithm for cell type estimation

Igor Cima; Celia Dobersalske; Björn Scheffler


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  <identifier identifierType="DOI">10.5281/zenodo.4782282</identifier>
  <creators>
    <creator>
      <creatorName>Igor Cima</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-6196-6971</nameIdentifier>
      <affiliation>DKFZ-Division Translational Neurooncology at the West German Cancer Center (WTZ), University Hospital Essen, 45147 Essen, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Celia Dobersalske</creatorName>
      <affiliation>DKFZ-Division Translational Neurooncology at the West German Cancer Center (WTZ), University Hospital Essen, 45147 Essen, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Björn Scheffler</creatorName>
      <affiliation>DKFZ-Division Translational Neurooncology at the West German Cancer Center (WTZ), University Hospital Essen, 45147 Essen, Germany</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Syllogist, a reference-based algorithm for cell type estimation</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <contributors>
    <contributor contributorType="ContactPerson">
      <contributorName>Igor Cima</contributorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-6196-6971</nameIdentifier>
      <affiliation>DKFZ-Division Translational Neurooncology at the West German Cancer Center (WTZ), University Hospital Essen, 45147 Essen, Germany</affiliation>
    </contributor>
  </contributors>
  <dates>
    <date dateType="Issued">2021-05-23</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4782282</alternateIdentifier>
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    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4782281</relatedIdentifier>
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  <version>0.1.0</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;R script and associated reference map used in the manuscript:&lt;/p&gt;

&lt;p&gt;&amp;quot;Tumor-associated hematopoietic stem and progenitor cells positively linked to glioblastoma progression&amp;quot; by Lu I* and&amp;nbsp;Dobersalske C*, Rauschenbach L, Teuber-Hanselmann S, Steinbach A, Ullrich V, Prasad S, Blau T, Kebir S, Siveke JT, Becker JC, Sure U, Glas M,&amp;nbsp;Scheffler B* and Cima I*.&lt;/p&gt;

&lt;p&gt;Funding: Wilhelm Sander Stiftung (2017.148.1), the German Cancer Consortium (DKTK)&lt;/p&gt;</description>
    <description descriptionType="Other">Contact: igor.cima@uk-essen.de</description>
  </descriptions>
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