Dataset Open Access

The Natural Products Atlas - data download

Jeffrey A. van Santen; Roger G. Linington; NP Atlas Contributors

Download files from the Natural Products Atlas (npatlas.org).

van Santen, J. A.; Jacob, G.; Leen Singh, A.; Aniebok, V.; Balunas, M. J.; Bunsko, D.; Carnevale Neto, F.; Castaño-Espriu, L.; Chang, C.; Clark, T. N.; Cleary Little, J. L.; Delgadillo, D. A.; Dorrestein, P. C.; Duncan, K. R.; Egan, J. M.; Galey, M. M.; Haeckl, F. P. J.; Hua, A.; Hughes, A. H.; Iskakova, D.; Khadilkar, A.; Lee, J.-H.; Lee, S.; LeGrow, N.; Liu, D. Y.; Macho, J. M.; McCaughey, C. S.; Medema, M. H.; Neupane, R. P.; O’Donnell, T. J.; Paula, J. S.; Sanchez, L. M.; Shaikh, A. F.; Soldatou, S.; Terlouw, B. R.; Tran, T. A.; Valentine, M.; van der Hooft, J. J. J.; Vo, D. A.; Wang, M.; Wilson, D.; Zink, K. E.; Linington, R. G.* "The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery”, ACS Central Science2019, 5, 11, 1824-1833. 10.1021/acscentsci.9b00806

 

Now includes ontological data from:

NP Classifier - https://npclassifier.ucsd.edu/

ClassyFire - http://classyfire.wishartlab.com/

Including archived versions, extra data download types, and new MIBiG and GNPS IDs

Includes dump of compounds deemed out of scope and removed from DB on May 19, 2021.

Files (1.0 GB)
Name Size
np_atlas_2018_07.tsv
md5:af7ab122b4b5736bc2c8deafd1e65cd8
14.9 MB Download
np_atlas_2018_09.tsv
md5:09f05172730d05130ce1896d2ee1bbb2
14.9 MB Download
np_atlas_2019_02.tsv
md5:799f2aaa756c352d8b4f5f65297f4f67
15.3 MB Download
np_atlas_2019_08.tsv
md5:6d148e37ba6b71431190450ad8bf8e48
18.5 MB Download
np_atlas_2019_12.tsv
md5:380390732ecb4ffe9f29c7a73c68e3b5
19.5 MB Download
np_atlas_2020_06.sdf
md5:eeb8405d13ee810f49f8b37c235ba43b
148.6 MB Download
np_atlas_2020_06.tsv
md5:523ecd675f853e660096ddaccdbe0aad
24.0 MB Download
np_atlas_2020_06_classyfire.json
md5:ca5f5889def63e20a96e932fc1373bc5
232.9 MB Download
np_atlas_2020_06_npclassifier.json
md5:6be202b80cbcea014695935bf043d7c3
540.0 MB Download
np_atlas_outofscope_compounds_May-19-2021.json
md5:061580d7abca748b48e5c05ac58a6091
307.9 kB Download
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Data volume 4.6 GB2.4 GB
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