Published May 5, 2021
| Version v1.1.0
Dataset
Open
mGEMS Escherichia coli reference dataset
Creators
- 1. University of Helsinki, Helsinki, Finland
- 2. University of Oslo, Oslo, Norway
Description
This dataset contains the E. coli sequences (assembled with shovill v0.9.0), their sequence type 131 sublineages, poppunk clusters, and accession numbers used in the mGEMS publication as the reference dataset.
Notes
v1.1.0 update: added the PopPunk clusters that were used in the revised mGEMS publication.
Files
Files
(340.5 MB)
| Name | Size | Download all |
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md5:21e1fdc1c4c0a5ca444a1e3070ab6577
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340.5 MB | Download |