There is a newer version of this record available.

Software Open Access

nf-core/eager: [2.3.4] - Aalen (Patch) - 2021-05-05

James A. Fellows Yates; Alexander Peltzer; Thiseas C. Lamnidis; Maxime Borry; ZandraFagernas; Ido Bar; Aida Andrades Valtueña; Evan Floden; nf-core bot; alexandregilardet; Maxime U. Garcia; Patrick Hüther; Phil Ewels; Gisela Gabernet; sc13-bioinf; Charles Plessy; Harshil Patel; Olga Botvinnik; Selina Carlhoff; Alex Hübner

Added

  • #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts
Fixed
  • Corrected explanation of the "--min_adap_overlap" parameter for AdapterRemoval in the docs
  • #725 bwa_index doc update
  • Re-adds gzip piping to AdapterRemovalFixPrefix to speed up process after reports of being very slow
  • Updated DamageProfiler citation from bioRxiv to publication
Dependencies
  • Removed pinning of tbb (upstream bug in bioconda fixed)
  • Bumped pigz to 2.6 to fix rare stall bug when compressing data after AdapterRemoval
  • Bumped Bowtie2 to 2.4.2 to fix issues with tbb version
Deprecated

Files (17.0 MB)
Name Size
nf-core/eager-2.3.4.zip
md5:6c97fc862c9bc39ec3e7afe0bd017b68
17.0 MB Download
213
76
views
downloads
All versions This version
Views 2138
Downloads 762
Data volume 260.8 MB33.9 MB
Unique views 1707
Unique downloads 362

Share

Cite as