Published April 21, 2021
| Version v6
Software
Open
DNA methylation calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation
Creators
- 1. The Jackson Laboratory for Genomic Medicine
- 2. St. Jude Children's Research Hospital
- 3. Weill Cornell Medicine
- 4. University of Pennsylvania
- 5. The Jackson Laboratory Cancer Center
Description
File list
- nanome.tar.gz: source code of paper, also available at GitHub https://github.com/liuyangzzu/nanome.
- C.tar.gz: The genome motif generated by DeepMod cluster model for 5mC prediction in human genome.
- dna_r9.4.1_450bps_hac.cfg: Guppy basecall model config used in paper.
- genome-annotation.tar.gz: Genome annotation files.
- model.CpG.R9.4_1D.human_hx1.bn17.sn360.v0.1.7+.tar: DeepSignal methylation calling model used in paper.
- megalodon_model.tar.gz: Megalodon model config used in paper.
- reference_genome.tar.gz: Reference genome of Human and E. coli.
*Correspondence should be addressed to S.L. (sheng.li@jax.org).
Files
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